# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Trm112p.hmm.txt
# target sequence database: proteomes/Nematostella_vectensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Trm112p [M=68]
Accession: PF03966.15
Description: Trm112p-like protein
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.8e-17 62.7 0.0 6.1e-17 62.4 0.0 1.1 1 tr|A7RGF4|A7RGF4_NEMVE Predicted protein OS=Nematostella vec
2.3e-05 25.3 0.1 5.3e-05 24.1 0.1 1.6 1 tr|A7S3Z0|A7S3Z0_NEMVE Predicted protein OS=Nematostella vec
------ inclusion threshold ------
0.095 13.7 0.2 0.13 13.3 0.2 1.3 1 tr|A8DVN3|A8DVN3_NEMVE Predicted protein (Fragment) OS=Nemat
0.17 12.9 8.1 10 7.2 0.0 4.6 4 tr|A7SBC6|A7SBC6_NEMVE Predicted protein OS=Nematostella vec
0.34 12.0 3.1 34 5.5 0.8 2.9 2 tr|A7S0V3|A7S0V3_NEMVE Predicted protein (Fragment) OS=Nemat
1.5 9.8 4.8 6.9 7.8 0.4 3.0 2 tr|A7STI5|A7STI5_NEMVE Predicted protein (Fragment) OS=Nemat
Domain annotation for each sequence (and alignments):
>> tr|A7RGF4|A7RGF4_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g80846 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 62.4 0.0 1.5e-20 6.1e-17 2 68 .] 3 112 .. 2 112 .. 0.98
Alignments for each domain:
== domain 1 score: 62.4 bits; conditional E-value: 1.5e-20
TGGCCC-B-TTTHH.....C-..........................-HHHHHHHHH.TT---.S-SS----S...........CHH CS
Trm112p 2 llllniLaCpackg.....pL..........................dwealvevaa.lglne.lpkekpedy...........ell 44
ll++n+L+++ +kg pL +wealv++a+ g + lp ++ e y ++l
tr|A7RGF4|A7RGF4_NEMVE 3 LLTHNMLKSH-VKGvkngfPLaieaqdvqvcevdfnpefisrmipklEWEALVQAAQqIGHGQdLPTQLAEGYesdndflkkahHVL 88
79********.**************************************************************************** PP
TTEECCCCEEEETTTTEEEEEETT CS
Trm112p 45 leldieegeLvCpncgraYpIkdG 68
le++++eg+L+Cp++gr +p+ +G
tr|A7RGF4|A7RGF4_NEMVE 89 LEVEVQEGQLICPETGRKFPVTNG 112
**********************98 PP
>> tr|A7S3Z0|A7S3Z0_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g206423 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.1 0.1 1.3e-08 5.3e-05 2 68 .] 42 80 .. 41 80 .. 0.94
Alignments for each domain:
== domain 1 score: 24.1 bits; conditional E-value: 1.3e-08
TGGCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 2 llllniLaCpackgpLdwealvevaalglnelpkekpedyellleldieegeLvCpncgraYpIkdG 68
+ll+iL+Cp+ k+pL ++ e++eL++ + g a+ I++G
tr|A7S3Z0|A7S3Z0_NEMVE 42 VKLLDILVCPLSKKPL------------------------R----YNAETNELISDEIGVAFSIEQG 80
68**************........................5....9******************998 PP
>> tr|A8DVN3|A8DVN3_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g225758 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.3 0.2 3.2e-05 0.13 41 64 .. 42 70 .. 3 70 .. 0.70
Alignments for each domain:
== domain 1 score: 13.3 bits; conditional E-value: 3.2e-05
S....CHHTTEECCC.CEEEETTTTEEEE CS
Trm112p 41 y....ellleldiee.geLvCpncgraYp 64
e++ + +iee ++C++cgr Yp
tr|A8DVN3|A8DVN3_NEMVE 42 KacpsEECNKKVIEEdSGFYCEKCGRKYP 70
044444555555655499**********9 PP
>> tr|A7SBC6|A7SBC6_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g209648 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.5 0.3 0.0087 36 42 60 .. 67 85 .. 19 87 .. 0.76
2 ? 0.2 0.0 0.38 1.5e+03 46 59 .. 204 217 .. 156 222 .. 0.72
3 ? 0.5 0.3 0.31 1.2e+03 18 59 .. 305 341 .. 242 347 .. 0.45
4 ? 7.2 0.0 0.0025 10 7 41 .. 373 404 .. 371 447 .. 0.72
Alignments for each domain:
== domain 1 score: 5.5 bits; conditional E-value: 0.0087
CHHTTEECCCCEEEETTTT CS
Trm112p 42 ellleldieegeLvCpncg 60
+ ++ + +eg+++Cp+c+
tr|A7SBC6|A7SBC6_NEMVE 67 VIIVKAQWTEGKIYCPKCK 85
666788889*********8 PP
== domain 2 score: 0.2 bits; conditional E-value: 0.38
TEECCCCEEEETTT CS
Trm112p 46 eldieegeLvCpnc 59
+ i+e+e++C+ +
tr|A7SBC6|A7SBC6_NEMVE 204 NRYILEQEIICNGQ 217
467999*****976 PP
== domain 3 score: 0.5 bits; conditional E-value: 0.31
-HHHHHHHHH.TT---.S-SS----SCHHTTEECCC..CEEEETTT CS
Trm112p 18 dwealvevaa.lglne.lpkekpedyellleldiee..geLvCpnc 59
++ +l + ++ ++ e p+ +e d++e L Cp c
tr|A7SBC6|A7SBC6_NEMVE 305 RYHVLENDVQeMQVHEvEPE---------IESDQVElpDHLSCPVC 341
33333333333333221111.........22222224455555555 PP
== domain 4 score: 7.2 bits; conditional E-value: 0.0025
C-B-TTTHHC--HHHHHHHHHTT---S-SS----S CS
Trm112p 7 iLaCpackgpLdwealvevaalglnelpkekpedy 41
+L Cp+c++p+ + ev++ +e++k+ p +y
tr|A7SBC6|A7SBC6_NEMVE 373 VLRCPLCRKPVNYVFPAEVTR---AEVRKTFPHEY 404
79*********6665555555...33444444443 PP
>> tr|A7S0V3|A7S0V3_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g100176 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.1 0.1 0.012 47 50 64 .. 4 18 .. 1 20 [. 0.90
2 ? 5.5 0.8 0.0085 34 38 63 .. 65 102 .. 23 103 .. 0.73
Alignments for each domain:
== domain 1 score: 5.1 bits; conditional E-value: 0.012
CCCEEEETTTTEEEE CS
Trm112p 50 eegeLvCpncgraYp 64
eg++ Cp+c ++p
tr|A7S0V3|A7S0V3_NEMVE 4 HEGSFKCPKCPMTFP 18
59********99998 PP
== domain 2 score: 5.5 bits; conditional E-value: 0.0085
---S..............CHHTTEECCCCEEEETTTTEEE CS
Trm112p 38 pedy..............ellleldieegeLvCpncgraY 63
++++ + l+++ e ++Cp+c ++
tr|A7S0V3|A7S0V3_NEMVE 65 CTEPeceqsfgrqdhltdH--LRTHTGERPFQCPHCSKTF 102
4444444667777777544..88999999999*9999888 PP
>> tr|A7STI5|A7STI5_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g131119 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 7.8 0.4 0.0017 6.9 42 65 .. 40 63 .. 7 65 .. 0.76
2 ? 2.8 0.4 0.06 2.4e+02 40 61 .. 149 173 .. 88 174 .. 0.75
Alignments for each domain:
== domain 1 score: 7.8 bits; conditional E-value: 0.0017
CHHTTEECCCCEEEETTTTEEEEE CS
Trm112p 42 ellleldieegeLvCpncgraYpI 65
e+l +++ +g+LvCp c+ + I
tr|A7STI5|A7STI5_NEMVE 40 EELAVHSEGKGKLVCPLCKAEFQI 63
4555567778*********99998 PP
== domain 2 score: 2.8 bits; conditional E-value: 0.06
-S...CHHTTEECCCCEEEETTTTE CS
Trm112p 40 dy...ellleldieegeLvCpncgr 61
+ + ++++e+ +L C++c+
tr|A7STI5|A7STI5_NEMVE 149 AMseaSFCTKHKDEKLKLFCESCKE 173
336667789999999********86 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (68 nodes)
Target sequences: 24428 (8257945 residues searched)
Passed MSV filter: 889 (0.0363927); expected 488.6 (0.02)
Passed bias filter: 654 (0.0267726); expected 488.6 (0.02)
Passed Vit filter: 85 (0.00347961); expected 24.4 (0.001)
Passed Fwd filter: 17 (0.000695923); expected 0.2 (1e-05)
Initial search space (Z): 24428 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.13u 0.01s 00:00:00.14 Elapsed: 00:00:00.06
# Mc/sec: 9359.00
//
[ok]