# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Trm112p.hmm.txt
# target sequence database:        proteomes/Pseudomonas_aeruginosa.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Trm112p  [M=68]
Accession:   PF03966.15
Description: Trm112p-like protein
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence              Description
    ------- ------ -----    ------- ------ -----   ---- --  --------              -----------
    5.6e-11   41.2   0.1    1.4e-10   40.0   0.1    1.6  1  sp|Q9HZM4|Y2980_PSEAE  UPF0434 protein PA2980 OS=Pseudomonas 


Domain annotation for each sequence (and alignments):
>> sp|Q9HZM4|Y2980_PSEAE  UPF0434 protein PA2980 OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 /
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.1   2.5e-14   1.4e-10       1      68 []       2      41 ..       2      41 .. 0.97

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 2.5e-14
                           BTGGCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEEEEETT CS
                Trm112p  1 kllllniLaCpackgpLdwealvevaalglnelpkekpedyellleldieegeLvCpncgraYpIkdG 68
                           +++ll+iLaCp++kgpL                        +    l++++ eL+++ +g+aYpI+dG
  sp|Q9HZM4|Y2980_PSEAE  2 DPKLLDILACPLTKGPL------------------------V----LSEDKTELISKQAGLAYPIRDG 41
                           689**************........................8....9********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (68 nodes)
Target sequences:                         5563  (1857172 residues searched)
Passed MSV filter:                       148  (0.0266044); expected 111.3 (0.02)
Passed bias filter:                      141  (0.025346); expected 111.3 (0.02)
Passed Vit filter:                        13  (0.00233687); expected 5.6 (0.001)
Passed Fwd filter:                         1  (0.000179759); expected 0.1 (1e-05)
Initial search space (Z):               5563  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02
# Mc/sec: 6314.38
//
[ok]