# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Trm112p.hmm.txt
# target sequence database:        proteomes/Saccharomyces_cerevisiae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Trm112p  [M=68]
Accession:   PF03966.15
Description: Trm112p-like protein
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence              Description
    ------- ------ -----    ------- ------ -----   ---- --  --------              -----------
    3.5e-22   77.2   0.1    4.3e-22   77.0   0.1    1.1  1  sp|P53738|TR112_YEAST  Multifunctional methyltransferase subu


Domain annotation for each sequence (and alignments):
>> sp|P53738|TR112_YEAST  Multifunctional methyltransferase subunit TRM112 OS=Saccharomyces cerevisiae (strain ATCC 2045
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.1   7.1e-26   4.3e-22       1      68 []       2     124 ..       2     124 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 7.1e-26
                            BTGGCCC-B-TTTHH........C-.............................-HHHHHHHHH.TT---S-SS----S......... CS
                Trm112p   1 kllllniLaCpackg........pL.............................dwealvevaa.lglnelpkekpedy......... 41 
                            k+l++n+L+C+ +k         pL                             dw+a+++vaa lg+n lp++kp+++         
  sp|P53738|TR112_YEAST   2 KFLTTNFLKCS-VKAcdtsndnfPLqydgskcqlvqdesiefnpefllnivdrvDWPAVLTVAAeLGNNALPPTKPSFPssiqeltdd 88 
                            799********.9999*******99*************************************************************** PP

                            .........CHHTTEECCCCEEEETTTTEEEEEETT CS
                Trm112p  42 .........ellleldieegeLvCpncgraYpIkdG 68 
                                     +lll+++i ege+ C+ncg++Y+Ik+G
  sp|P53738|TR112_YEAST  89 dmailndlhTLLLQTSIAEGEMKCRNCGHIYYIKNG 124
                            ***********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (68 nodes)
Target sequences:                         6049  (2936363 residues searched)
Passed MSV filter:                       201  (0.0332286); expected 121.0 (0.02)
Passed bias filter:                      169  (0.0279385); expected 121.0 (0.02)
Passed Vit filter:                        15  (0.00247975); expected 6.0 (0.001)
Passed Fwd filter:                         1  (0.000165317); expected 0.1 (1e-05)
Initial search space (Z):               6049  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.02
# Mc/sec: 9983.63
//
[ok]