# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Trm112p.hmm.txt # target sequence database: proteomes/Strongylocentrotus_purpuratus.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Trm112p [M=68] Accession: PF03966.15 Description: Trm112p-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-17 64.1 0.0 2.5e-17 63.9 0.0 1.1 1 tr|W4YZ96|W4YZ96_STRPU Uncharacterized protein OS=Strongyloc 2.9e-06 28.4 0.0 5.5e-06 27.5 0.0 1.5 1 tr|W4Z339|W4Z339_STRPU Uncharacterized protein OS=Strongyloc 0.00019 22.6 23.2 15 6.9 0.1 10.1 4 tr|W4YK36|W4YK36_STRPU Uncharacterized protein OS=Strongyloc ------ inclusion threshold ------ 0.011 17.0 6.5 2.1 9.6 0.2 2.9 2 tr|W4XUZ6|W4XUZ6_STRPU Uncharacterized protein OS=Strongyloc 0.02 16.1 0.6 0.56 11.5 0.1 3.2 2 tr|W4XNZ3|W4XNZ3_STRPU Uncharacterized protein OS=Strongyloc 0.04 15.1 3.5 0.061 14.6 1.8 2.3 2 tr|W4XXC6|W4XXC6_STRPU Uncharacterized protein OS=Strongyloc 0.18 13.0 0.4 0.88 10.8 0.4 2.2 1 tr|W4YJH0|W4YJH0_STRPU Uncharacterized protein OS=Strongyloc 0.25 12.6 0.2 0.25 12.6 0.2 2.2 1 tr|W4Z1I9|W4Z1I9_STRPU Uncharacterized protein OS=Strongyloc 0.76 11.0 12.3 34 5.8 0.1 5.7 5 tr|W4Y1H3|W4Y1H3_STRPU Uncharacterized protein OS=Strongyloc 1.6 10.0 6.1 1.4 10.2 3.4 2.5 2 tr|W4XXC5|W4XXC5_STRPU Uncharacterized protein OS=Strongyloc 2.2 9.5 3.7 18 6.6 0.2 4.2 3 tr|W4XSM9|W4XSM9_STRPU Uncharacterized protein OS=Strongyloc 2.4 9.5 5.0 51 5.2 0.1 4.1 4 tr|W4YV04|W4YV04_STRPU Uncharacterized protein OS=Strongyloc 4.4 8.6 5.6 4.8 8.5 2.9 2.6 2 tr|W4XIY6|W4XIY6_STRPU Uncharacterized protein OS=Strongyloc 4.4 8.6 5.6 4.8 8.5 2.9 2.5 2 tr|W4XXC4|W4XXC4_STRPU Uncharacterized protein OS=Strongyloc 4.7 8.5 5.4 59 5.0 0.1 4.0 3 tr|W4XWZ5|W4XWZ5_STRPU Uncharacterized protein OS=Strongyloc 4.9 8.4 25.8 18 6.6 0.4 8.2 7 tr|W4YQ71|W4YQ71_STRPU Uncharacterized protein OS=Strongyloc 6.5 8.1 9.8 4.5 8.6 0.0 5.4 6 tr|W4Y1R1|W4Y1R1_STRPU Uncharacterized protein OS=Strongyloc Domain annotation for each sequence (and alignments): >> tr|W4YZ96|W4YZ96_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.9 0.0 1.5e-20 2.5e-17 1 68 [] 2 112 .. 2 112 .. 0.98 Alignments for each domain: == domain 1 score: 63.9 bits; conditional E-value: 1.5e-20 BTGGCCC-B-TTTHH.....C-..........................-HHHHHHHHH.TT---.S-SS----S...........CH CS Trm112p 1 kllllniLaCpackg.....pL..........................dwealvevaa.lglne.lpkekpedy...........el 43 kll++n+L+++ +kg pL dw al+e+a + n lp+++ e+y + tr|W4YZ96|W4YZ96_STRPU 2 KLLTHNMLTSH-VKGvkngyPLriepentrilevefnpdfiarmipriDWTALYETACgINMNGsLPAQPVENYesdeeflkeahRV 87 789********.*************************************************9999********************99 PP HTTEECCCCEEEETTTTEEEEEETT CS Trm112p 44 lleldieegeLvCpncgraYpIkdG 68 lle++i+eg LvCp+ gr +pIk+G tr|W4YZ96|W4YZ96_STRPU 88 LLEIEIVEGNLVCPESGRKFPIKNG 112 ************************9 PP >> tr|W4Z339|W4Z339_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.5 0.0 3.3e-09 5.5e-06 2 68 .] 50 88 .. 49 88 .. 0.95 Alignments for each domain: == domain 1 score: 27.5 bits; conditional E-value: 3.3e-09 TGGCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEEEEETT CS Trm112p 2 llllniLaCpackgpLdwealvevaalglnelpkekpedyellleldieegeLvCpncgraYpIkdG 68 +ll iL+Cp+ k+pL +d +++eL++ + + aYp+k+G tr|W4Z339|W4Z339_STRPU 50 TDLLKILVCPISKQPL------------------------R----FDADSNELISDAINVAYPVKNG 88 689*************........................6....*********************9 PP >> tr|W4YK36|W4YK36_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.6 1.0 0.39 6.6e+02 10 63 .. 131 166 .. 46 167 .. 0.71 2 ? 5.4 3.3 0.027 45 66 66 .. 310 310 .. 185 452 .. 0.64 3 ! 6.9 0.1 0.009 15 41 66 .. 471 534 .. 438 535 .. 0.62 4 ? 0.5 2.3 0.9 1.5e+03 63 63 .. 587 587 .. 537 670 .. 0.55 Alignments for each domain: == domain 1 score: 1.6 bits; conditional E-value: 0.39 -TTTHHC--HHHHHHHHHTT---S-SS----S............CHHTTEECCCCEEEETTTTEEE CS Trm112p 10 CpackgpLdwealvevaalglnelpkekpedy............ellleldieegeLvCpncgraY 63 Cp+ + l+++ e + Cp+c+ ++ tr|W4YK36|W4YK36_STRPU 131 CPH----------------------------CdkglsrktiltdH--LRTHTGEKPFKCPHCDKTF 166 222............................13444555555433..6788888888888887766 PP == domain 2 score: 5.4 bits; conditional E-value: 0.027 E CS Trm112p 66 k 66 k tr|W4YK36|W4YK36_STRPU 310 K 310 3 PP == domain 3 score: 6.9 bits; conditional E-value: 0.009 S......................................CHHTTEECCCCEEEETTTTEEEEEE CS Trm112p 41 y......................................ellleldieegeLvCpncgraYpIk 66 ++ l+++ e + Cp+c+ ++ +k tr|W4YK36|W4YK36_STRPU 471 CdkgfsvktiltahlrthtgekpfkcsqcdkgfsvktilTAHLKTHTGEKPFKCPRCDKTFSVK 534 234444444444444444444444444557888888888677999999*********9999886 PP == domain 4 score: 0.5 bits; conditional E-value: 0.9 E CS Trm112p 63 Y 63 + tr|W4YK36|W4YK36_STRPU 587 F 587 2 PP >> tr|W4XUZ6|W4XUZ6_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 0.2 0.0013 2.1 30 61 .. 137 163 .. 85 172 .. 0.73 2 ? 8.8 1.8 0.0022 3.7 10 61 .. 183 230 .. 175 239 .. 0.60 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.0013 ---S-SS----S......CHHTTEECCCCEEEETTTTE CS Trm112p 30 lnelpkekpedy......ellleldieegeLvCpncgr 61 + + +++ ee eL Cp+c+ tr|W4XUZ6|W4XUZ6_STRPU 137 ED---------EptkpcpN--CKYELEETELSCPDCKN 163 22.........23333442..349************85 PP == domain 2 score: 8.8 bits; conditional E-value: 0.0022 -TTTHH.C--HHHHHHHHH.TT---S-SS----S......CHHTTEECCCCEEEETTTTE CS Trm112p 10 Cpackg.pLdwealvevaa.lglnelpkekpedy......ellleldieegeLvCpncgr 61 Cp c L ++ l ++ ++ + + +++ ee eL Cp+c+ tr|W4XUZ6|W4XUZ6_STRPU 183 CPKCDFpAL-YSELTRKPDkTEED---------EptkpcpN--CKYELEETELSCPDCKN 230 555544323.33333333322222.........13333442..349************85 PP >> tr|W4XNZ3|W4XNZ3_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.4 0.0 1.7 2.8e+03 51 60 .. 10 19 .. 6 23 .. 0.69 2 ? 11.5 0.1 0.00033 0.56 7 61 .. 51 168 .. 50 169 .. 0.68 Alignments for each domain: == domain 1 score: -0.4 bits; conditional E-value: 1.7 CCEEEETTTT CS Trm112p 51 egeLvCpncg 60 ++L Cp c tr|W4XNZ3|W4XNZ3_STRPU 10 AQSLECPVCL 19 6788888884 PP == domain 2 score: 11.5 bits; conditional E-value: 0.00033 C-B-TTTHH..........C-...................................................-HHHHHHHHHTT--- CS Trm112p 7 iLaCpackg..........pL...................................................dwealvevaalglne 32 +L Cp+c+ +L +w+a+ + l +e tr|W4XNZ3|W4XNZ3_STRPU 51 MLRCPVCRAktqvpnqdvsKLptnlalksliedmqnryqfcsncnsedrpqavvycqdcdryfcitchnthaQWPAFTSHEVLSMSE 137 8********997777766633556666777777777777777777777777777777777777777777777777777777777777 PP S-SS----S..CHHTTEECCCCEEEETTTTE CS Trm112p 33 lpkekpedy..ellleldieegeLvCpncgr 61 + + k + + + ++ +e++e C+nc+r tr|W4XNZ3|W4XNZ3_STRPU 138 IVSGKVSVRryRKCRKHRKEDEECFCSNCRR 168 6666666555555666777777777777776 PP >> tr|W4XXC6|W4XXC6_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.6 1.8 3.6e-05 0.061 4 68 .] 9 66 .. 6 66 .. 0.78 2 ? -2.7 0.0 9 1.5e+04 10 19 .. 251 277 .. 249 306 .. 0.55 Alignments for each domain: == domain 1 score: 14.6 bits; conditional E-value: 3.6e-05 GCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----S...........CHHTTEECCCCEEEETTTTEEEEEETT CS Trm112p 4 llniLaCpackgpLdwealvevaalglnelpkekpedy...........ellleldieegeLvCpncgraYpIkdG 68 ++ L Cp+c g L+ p+ e+lle+++++++++Cp c+ pI +G tr|W4XXC6|W4XXC6_STRPU 9 VHKNLECPVCLGFLK------------------DPKILrcfhtfckgclETLLEFHQDKQSITCPICRESTPIANG 66 566789999999992..................222224455677888999*******************999998 PP == domain 2 score: -2.7 bits; conditional E-value: 9 -TTTHH....C-.............-H CS Trm112p 10 Cpackg....pL.............dw 19 C ++k+ pL ++ tr|W4XXC6|W4XXC6_STRPU 251 CELVKNglryPLqsmalkahstlceEL 277 667777555555333333333333333 PP >> tr|W4YJH0|W4YJH0_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 0.4 0.00052 0.88 5 59 .. 29 118 .. 26 125 .. 0.74 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 0.00052 CCC-B-TTTHH..C-.....................-HHHHHHHHH.TT---.S-SS----S......CHHTTEECCC......... CS Trm112p 5 lniLaCpackg..pL.....................dwealvevaa.lglne.lpkekpedy......ellleldiee......... 51 + +L+Cp c++ L d l+++++ +++ p ++ e+y + e tr|W4YJH0|W4YJH0_STRPU 29 HRLLVCPECRTemALgedgvnglkrnfslqtiidkyDNMTLSQKEEtSRQEAtEPTPTEEKYtvkcerH------TNEvayficetc 109 679********6644999999999999999999986666777777777777767777777776655551......444445666678 PP .CEEEETTT CS Trm112p 52 .geLvCpnc 59 g+L+C+ c tr|W4YJH0|W4YJH0_STRPU 110 wGTLICRVC 118 8*****999 PP >> tr|W4Z1I9|W4Z1I9_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.2 0.00015 0.25 38 68 .] 21 65 .. 4 65 .. 0.78 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 0.00015 ---S..............CHHTTEECCCCEEEETTTTEEEEEETT CS Trm112p 38 pedy..............ellleldieegeLvCpncgraYpIkdG 68 ped+ l ++ +++e eL Cpnc + pI dG tr|W4Z1I9|W4Z1I9_STRPU 21 PEDPkllacghtfckkclALVFQSQMKETELSCPNCSKISPITDG 65 444455566666666667788999********************9 PP >> tr|W4Y1H3|W4Y1H3_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.4 0.1 0.94 1.6e+03 45 63 .. 138 156 .. 110 159 .. 0.84 2 ? 2.1 0.0 0.28 4.6e+02 47 64 .. 220 237 .. 188 239 .. 0.72 3 ? 5.8 0.1 0.02 34 40 67 .. 296 328 .. 255 329 .. 0.81 4 ? 4.0 0.1 0.071 1.2e+02 41 67 .. 401 437 .. 372 438 .. 0.75 5 ? 1.4 0.1 0.48 8e+02 45 64 .. 561 580 .. 529 582 .. 0.77 Alignments for each domain: == domain 1 score: 0.4 bits; conditional E-value: 0.94 TTEECCCCEEEETTTTEEE CS Trm112p 45 leldieegeLvCpncgraY 63 l +d+e + C++c r+Y tr|W4Y1H3|W4Y1H3_STRPU 138 LGYDKEADCFRCHRCERTY 156 45888899999*******9 PP == domain 2 score: 2.1 bits; conditional E-value: 0.28 EECCCCEEEETTTTEEEE CS Trm112p 47 ldieegeLvCpncgraYp 64 l+++e+ +vC cg ++p tr|W4Y1H3|W4Y1H3_STRPU 220 LCDKEEHFVCVTCGKHFP 237 678999***********9 PP == domain 3 score: 5.8 bits; conditional E-value: 0.02 -S.....CHHTTEECCCCEEEETTTTEEEEEET CS Trm112p 40 dy.....ellleldieegeLvCpncgraYpIkd 67 + ++ + +++++g++ C+ c r + +d tr|W4Y1H3|W4Y1H3_STRPU 296 SHlsrhmHTAHGFERVRGKILCTGCSRKFLLED 328 22555569999*****************98777 PP == domain 4 score: 4.0 bits; conditional E-value: 0.071 S..........CHHTTEECCCCEEEETTTTEEEEEET CS Trm112p 41 y..........ellleldieegeLvCpncgraYpIkd 67 y ++ + +++++g++vC c + +d tr|W4Y1H3|W4Y1H3_STRPU 401 YssrshlsrhmHTVHGFERVRGKIVCMGCSKMFCLED 437 144455555569999**************99886655 PP == domain 5 score: 1.4 bits; conditional E-value: 0.48 TTEECCCCEEEETTTTEEEE CS Trm112p 45 leldieegeLvCpncgraYp 64 ++ + ++ ++ C +c++++p tr|W4Y1H3|W4Y1H3_STRPU 561 HNRHPKSSVFKCDHCDQTFP 580 357889999**********9 PP >> tr|W4XXC5|W4XXC5_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 3.4 0.00084 1.4 4 68 .] 9 66 .. 6 66 .. 0.77 2 ? -2.6 0.0 8.3 1.4e+04 10 39 .. 252 276 .. 251 305 .. 0.52 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.00084 GCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----S...........CHHTTEECCCCEEEETTTTEEEEEETT CS Trm112p 4 llniLaCpackgpLdwealvevaalglnelpkekpedy...........ellleldieegeLvCpncgraYpIkdG 68 ++ L Cp+c g L+ p+ e+lle +++++++ Cp c+ pI +G tr|W4XXC5|W4XXC5_STRPU 9 VHKNLECPICLGFLK------------------DPKILrcfhtfckgclETLLECHQDKQSISCPVCRESTPIPNG 66 566789999999882..................222224455677888999*****************99999887 PP == domain 2 score: -2.6 bits; conditional E-value: 8.3 -TTTHH....C--HHHHHHHHHTT---S-SS--- CS Trm112p 10 Cpackg....pLdwealvevaalglnelpkekpe 39 C ++k+ pL+ al +++e tr|W4XXC5|W4XXC5_STRPU 252 CELVKNglrgPLQNVALKAHN---------TLCE 276 555555555577222222222.........2222 PP >> tr|W4XSM9|W4XSM9_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.2 0.0 1.1 1.9e+03 31 63 .. 128 155 .. 111 156 .. 0.77 2 ? 6.6 0.2 0.011 18 41 63 .. 427 492 .. 391 493 .. 0.60 3 ? -2.8 0.0 9.2 1.5e+04 54 63 .. 540 549 .. 532 552 .. 0.72 Alignments for each domain: == domain 1 score: 0.2 bits; conditional E-value: 1.1 --S-SS----SCHHTTEECCCCEEEETTTTEEE CS Trm112p 31 nelpkekpedyellleldieegeLvCpncgraY 63 ++lp ++ +d+ l+++ g+ C cg a+ tr|W4XSM9|W4XSM9_STRPU 128 ESLPCQPKQDA-----LKDKGGTVKCAGCGKAF 155 44666666666.....78999*********999 PP == domain 2 score: 6.6 bits; conditional E-value: 0.011 S.............................................CHHTTEECCCCEEEETTTTEEE CS Trm112p 41 y.............................................ellleldieegeLvCpncgraY 63 + + +++ e +vC +cgra+ tr|W4XSM9|W4XSM9_STRPU 427 VceicdkvfqsihtllthkktvhnelkpfvcdichkdfkqlgnmktH--RRTHTGEKPFVCQECGRAF 492 44444555555555555555555555555555556666666666442..5689999***********9 PP == domain 3 score: -2.8 bits; conditional E-value: 9.2 EEETTTTEEE CS Trm112p 54 LvCpncgraY 63 + Cp cg ++ tr|W4XSM9|W4XSM9_STRPU 540 FACPVCGKTF 549 5677777766 PP >> tr|W4YV04|W4YV04_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 0.1 0.03 51 45 64 .. 374 393 .. 310 394 .. 0.81 2 ? -1.1 0.0 2.8 4.7e+03 53 64 .. 458 469 .. 429 471 .. 0.85 3 ? 3.2 0.1 0.13 2.1e+02 33 63 .. 646 687 .. 625 688 .. 0.74 4 ? -2.6 0.0 8.4 1.4e+04 54 66 .. 734 746 .. 720 747 .. 0.88 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.03 TTEECCCCEEEETTTTEEEE CS Trm112p 45 leldieegeLvCpncgraYp 64 l++++eeg ++C++c +p tr|W4YV04|W4YV04_STRPU 374 LNYNEEEGNFQCNSCENQFP 393 5699***********99988 PP == domain 2 score: -1.1 bits; conditional E-value: 2.8 EEEETTTTEEEE CS Trm112p 53 eLvCpncgraYp 64 +++C+ cg +p tr|W4YV04|W4YV04_STRPU 458 QFICTVCGKKFP 469 789******999 PP == domain 3 score: 3.2 bits; conditional E-value: 0.13 S-SS----S...........CHHTTEECCCCEEEETTTTEEE CS Trm112p 33 lpkekpedy...........ellleldieegeLvCpncgraY 63 ++++k+ + e e+++ +g++ C+ c r++ tr|W4YV04|W4YV04_STRPU 646 PRPYKCRHCprryrsrmaayEHEKETHEGKGSFKCNLCPRVF 687 555555555777777777773345799999********9998 PP == domain 4 score: -2.6 bits; conditional E-value: 8.4 EEETTTTEEEEEE CS Trm112p 54 LvCpncgraYpIk 66 + C+ cg ++I+ tr|W4YV04|W4YV04_STRPU 734 FKCEICGKGFRIR 746 57999**999998 PP >> tr|W4XIY6|W4XIY6_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 2.9 0.0028 4.8 4 68 .] 9 66 .. 6 66 .. 0.76 2 ? -2.4 0.0 7 1.2e+04 10 39 .. 252 276 .. 251 309 .. 0.51 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.0028 GCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----S...........CHHTTEECCCCEEEETTTTEEEEEETT CS Trm112p 4 llniLaCpackgpLdwealvevaalglnelpkekpedy...........ellleldieegeLvCpncgraYpIkdG 68 ++ L Cp+c g L+ + + e+ le +++++++ Cp c+ pI +G tr|W4XIY6|W4XIY6_STRPU 9 VHKNLECPVCLGFLKDPKI------------------LtcfhtfckgclETVLECHQDKQSISCPVCRESTPIPNG 66 5667899999998822222..................234456777779999****************99999887 PP == domain 2 score: -2.4 bits; conditional E-value: 7 -TTTHH....C--HHHHHHHHHTT---S-SS--- CS Trm112p 10 Cpackg....pLdwealvevaalglnelpkekpe 39 C ++k+ pL+ al +++e tr|W4XIY6|W4XIY6_STRPU 252 CELVKNglrgPLQNVALKAHN---------TLCE 276 555555555577222222222.........2222 PP >> tr|W4XXC4|W4XXC4_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 2.9 0.0028 4.8 4 68 .] 9 66 .. 6 66 .. 0.76 2 ? -2.4 0.0 7 1.2e+04 10 39 .. 252 276 .. 251 309 .. 0.51 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.0028 GCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----S...........CHHTTEECCCCEEEETTTTEEEEEETT CS Trm112p 4 llniLaCpackgpLdwealvevaalglnelpkekpedy...........ellleldieegeLvCpncgraYpIkdG 68 ++ L Cp+c g L+ + + e+ le +++++++ Cp c+ pI +G tr|W4XXC4|W4XXC4_STRPU 9 VHKNLECPVCLGFLKDPKI------------------LtcfhtfckgclETVLECHQDKQSISCPVCRESTPIPNG 66 5667899999998822222..................234456777779999****************99999887 PP == domain 2 score: -2.4 bits; conditional E-value: 7 -TTTHH....C--HHHHHHHHHTT---S-SS--- CS Trm112p 10 Cpackg....pLdwealvevaalglnelpkekpe 39 C ++k+ pL+ al +++e tr|W4XXC4|W4XXC4_STRPU 252 CELVKNglrgPLQNVALKAHN---------TLCE 276 555555555577222222222.........2222 PP >> tr|W4XWZ5|W4XWZ5_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 0.1 0.035 59 45 64 .. 374 393 .. 310 394 .. 0.81 2 ? -1.3 0.0 3.3 5.5e+03 53 64 .. 458 469 .. 429 471 .. 0.86 3 ? 3.0 0.1 0.15 2.5e+02 33 63 .. 646 687 .. 625 688 .. 0.74 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.035 TTEECCCCEEEETTTTEEEE CS Trm112p 45 leldieegeLvCpncgraYp 64 l++++eeg ++C++c +p tr|W4XWZ5|W4XWZ5_STRPU 374 LNYNEEEGNFQCNSCENQFP 393 5699***********99988 PP == domain 2 score: -1.3 bits; conditional E-value: 3.3 EEEETTTTEEEE CS Trm112p 53 eLvCpncgraYp 64 +++C+ cg +p tr|W4XWZ5|W4XWZ5_STRPU 458 QFICTVCGKKFP 469 789******999 PP == domain 3 score: 3.0 bits; conditional E-value: 0.15 S-SS----S...........CHHTTEECCCCEEEETTTTEEE CS Trm112p 33 lpkekpedy...........ellleldieegeLvCpncgraY 63 ++++k+ + e e+++ +g++ C+ c r++ tr|W4XWZ5|W4XWZ5_STRPU 646 PRPYKCRHCprryrsrmaayEHEKETHEGKGSFKCNLCPRVF 687 555555555777777777773345799999********9998 PP >> tr|W4YQ71|W4YQ71_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 0.4 0.011 18 49 64 .. 475 490 .. 371 491 .. 0.84 2 ? 4.5 0.0 0.049 83 48 64 .. 509 525 .. 494 526 .. 0.83 3 ? 3.6 0.1 0.093 1.6e+02 41 63 .. 670 709 .. 643 710 .. 0.70 4 ? -1.5 0.1 3.6 6.1e+03 42 63 .. 746 767 .. 721 768 .. 0.59 5 ? 5.6 0.0 0.022 38 6 66 .. 812 909 .. 808 910 .. 0.62 6 ? -1.9 0.4 5 8.4e+03 48 63 .. 1298 1313 .. 1245 1314 .. 0.68 7 ? -0.6 0.4 2 3.3e+03 36 63 .. 1362 1404 .. 1328 1407 .. 0.70 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.011 CCCCEEEETTTTEEEE CS Trm112p 49 ieegeLvCpncgraYp 64 +e+g+LvCp c+ a+p tr|W4YQ71|W4YQ71_STRPU 475 REDGKLVCPYCNAAFP 490 578************9 PP == domain 2 score: 4.5 bits; conditional E-value: 0.049 ECCCCEEEETTTTEEEE CS Trm112p 48 dieegeLvCpncgraYp 64 +++ +L+Cp+c aYp tr|W4YQ71|W4YQ71_STRPU 509 AKDRSKLQCPHCTKAYP 525 567899**********9 PP == domain 3 score: 3.6 bits; conditional E-value: 0.093 S.................CHHTTEECCCCEEEETTTTEEE CS Trm112p 41 y.................ellleldieegeLvCpncgraY 63 + ++l ++ ++ e vC++cg + tr|W4YQ71|W4YQ71_STRPU 670 VscptchnefsnkeqlivHVLTHFKTVSKEYVCKDCGKSF 709 04445555555555667899999*************9887 PP == domain 4 score: -1.5 bits; conditional E-value: 3.6 CHHTTEECCCCEEEETTTTEEE CS Trm112p 42 ellleldieegeLvCpncgraY 63 + ++++ e + C++cg +Y tr|W4YQ71|W4YQ71_STRPU 746 HFAVKHSNEFKIFSCTKCGVVY 767 5555666666667888888888 PP == domain 5 score: 5.6 bits; conditional E-value: 0.022 CC-B-TTTHH......C-...............-HHHHHHHHHTT---S-SS----S.........................CHHTT CS Trm112p 6 niLaCpackg......pL...............dwealvevaalglnelpkekpedy.........................ellle 46 n L Cp+c L l ++ p+e+pe++ ++ + tr|W4YQ71|W4YQ71_STRPU 812 NQLRCPFCNApyrsqeALdihlqaahdhvggssT---------LAKPDGPAETPEEVhgrtsvdsakkssiksegsakspktKEDIV 889 6799999999555555335544442222222220.........33333344444444777777777777777777777777733455 PP EECCCCEEEETTTTEEEEEE CS Trm112p 47 ldieegeLvCpncgraYpIk 66 +d++ g ++C c+ +p k tr|W4YQ71|W4YQ71_STRPU 890 TDEVAGCFTCQICDVMFPLK 909 9****************975 PP == domain 6 score: -1.9 bits; conditional E-value: 5 ECCCCEEEETTTTEEE CS Trm112p 48 dieegeLvCpncgraY 63 + +e ++ C +c++ + tr|W4YQ71|W4YQ71_STRPU 1298 CHQESKFNCGECKQSF 1313 4577888888888877 PP == domain 7 score: -0.6 bits; conditional E-value: 2 S----S...............CHHTTEECCCCEEEETTTTEEE CS Trm112p 36 ekpedy...............ellleldieegeLvCpncgraY 63 ekp++y + ++++ e + +C +c+ ++ tr|W4YQ71|W4YQ71_STRPU 1362 EKPKTYdctkcgknfpclsnlQGHMRIHHEGKKYTCGECNKVF 1404 4555556667778888888885558899999999999999988 PP >> tr|W4Y1R1|W4Y1R1_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.6 0.0 0.0027 4.5 16 68 .] 585 644 .. 566 644 .. 0.63 2 ? -1.2 0.1 3 5.1e+03 31 64 .. 965 994 .. 954 996 .. 0.81 3 ? -0.4 0.0 1.7 2.8e+03 47 63 .. 1265 1281 .. 1233 1282 .. 0.72 4 ? -1.6 0.0 4.1 6.9e+03 55 64 .. 1537 1546 .. 1502 1546 .. 0.80 5 ? -2.0 0.0 5.4 9e+03 10 19 .. 1609 1636 .. 1608 1676 .. 0.61 6 ? -1.3 0.1 3.1 5.3e+03 46 63 .. 1843 1860 .. 1803 1861 .. 0.78 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 0.0027 C--HHHHHHHHH.TT---S-SS----S.........CHHTTEECCCCEEEETTTTEEEEEETT CS Trm112p 16 pLdwealvevaa.lglnelpkekpedy.........ellleldieegeLvCpncgraYpIkdG 68 pL +++ v ++ + +++ p+++++ + e +++e+eL Cp cg ++ ++G tr|W4Y1R1|W4Y1R1_STRPU 585 PLNLSMKVVKSSdEAISDEPMDLSSGEththvsesiD---EEKKIEEELSCPICGKTFLCRNG 644 4544444444444444444444444448777764431...457778************99988 PP == domain 2 score: -1.2 bits; conditional E-value: 3 --S-SS----SCHHTTEECCCCEEEETTTTEEEE CS Trm112p 31 nelpkekpedyellleldieegeLvCpncgraYp 64 +e+ +e+++ + ++++g+ +C+ c+ ++p tr|W4Y1R1|W4Y1R1_STRPU 965 EEIEEEPCDLSN----ANKKKGTHTCKYCKKVFP 994 557777777665....88999999*********9 PP == domain 3 score: -0.4 bits; conditional E-value: 1.7 EECCCCEEEETTTTEEE CS Trm112p 47 ldieegeLvCpncgraY 63 +d+ + +L Cp+c +++ tr|W4Y1R1|W4Y1R1_STRPU 1265 YDEGSDALMCPHCPLHF 1281 4777899******8887 PP == domain 4 score: -1.6 bits; conditional E-value: 4.1 EETTTTEEEE CS Trm112p 55 vCpncgraYp 64 Cp cgr +p tr|W4Y1R1|W4Y1R1_STRPU 1537 CCPYCGRRFP 1546 59*****998 PP == domain 5 score: -2.0 bits; conditional E-value: 5.4 -TTTHH.......C-...........-H CS Trm112p 10 Cpackg.......pL...........dw 19 Cp ckg +L d+ tr|W4Y1R1|W4Y1R1_STRPU 1609 CPECKGfkcttrtQLqghyeqnhpqiDF 1636 9999998777666663333333333333 PP == domain 6 score: -1.3 bits; conditional E-value: 3.1 TEECCCCEEEETTTTEEE CS Trm112p 46 eldieegeLvCpncgraY 63 +++++e + C++c+ ++ tr|W4Y1R1|W4Y1R1_STRPU 1843 KVHEVEHPFHCTDCKATF 1860 689999********9887 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (68 nodes) Target sequences: 28594 (14266044 residues searched) Passed MSV filter: 1247 (0.0436105); expected 571.9 (0.02) Passed bias filter: 975 (0.0340981); expected 571.9 (0.02) Passed Vit filter: 103 (0.00360215); expected 28.6 (0.001) Passed Fwd filter: 26 (0.000909282); expected 0.3 (1e-05) Initial search space (Z): 28594 [actual number of targets] Domain search space (domZ): 17 [number of targets reported over threshold] # CPU time: 0.23u 0.01s 00:00:00.24 Elapsed: 00:00:00.11 # Mc/sec: 8819.01 // [ok]