# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Trm112p.hmm.txt
# target sequence database: proteomes/Strongylocentrotus_purpuratus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Trm112p [M=68]
Accession: PF03966.15
Description: Trm112p-like protein
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.1e-17 64.1 0.0 2.5e-17 63.9 0.0 1.1 1 tr|W4YZ96|W4YZ96_STRPU Uncharacterized protein OS=Strongyloc
2.9e-06 28.4 0.0 5.5e-06 27.5 0.0 1.5 1 tr|W4Z339|W4Z339_STRPU Uncharacterized protein OS=Strongyloc
0.00019 22.6 23.2 15 6.9 0.1 10.1 4 tr|W4YK36|W4YK36_STRPU Uncharacterized protein OS=Strongyloc
------ inclusion threshold ------
0.011 17.0 6.5 2.1 9.6 0.2 2.9 2 tr|W4XUZ6|W4XUZ6_STRPU Uncharacterized protein OS=Strongyloc
0.02 16.1 0.6 0.56 11.5 0.1 3.2 2 tr|W4XNZ3|W4XNZ3_STRPU Uncharacterized protein OS=Strongyloc
0.04 15.1 3.5 0.061 14.6 1.8 2.3 2 tr|W4XXC6|W4XXC6_STRPU Uncharacterized protein OS=Strongyloc
0.18 13.0 0.4 0.88 10.8 0.4 2.2 1 tr|W4YJH0|W4YJH0_STRPU Uncharacterized protein OS=Strongyloc
0.25 12.6 0.2 0.25 12.6 0.2 2.2 1 tr|W4Z1I9|W4Z1I9_STRPU Uncharacterized protein OS=Strongyloc
0.76 11.0 12.3 34 5.8 0.1 5.7 5 tr|W4Y1H3|W4Y1H3_STRPU Uncharacterized protein OS=Strongyloc
1.6 10.0 6.1 1.4 10.2 3.4 2.5 2 tr|W4XXC5|W4XXC5_STRPU Uncharacterized protein OS=Strongyloc
2.2 9.5 3.7 18 6.6 0.2 4.2 3 tr|W4XSM9|W4XSM9_STRPU Uncharacterized protein OS=Strongyloc
2.4 9.5 5.0 51 5.2 0.1 4.1 4 tr|W4YV04|W4YV04_STRPU Uncharacterized protein OS=Strongyloc
4.4 8.6 5.6 4.8 8.5 2.9 2.6 2 tr|W4XIY6|W4XIY6_STRPU Uncharacterized protein OS=Strongyloc
4.4 8.6 5.6 4.8 8.5 2.9 2.5 2 tr|W4XXC4|W4XXC4_STRPU Uncharacterized protein OS=Strongyloc
4.7 8.5 5.4 59 5.0 0.1 4.0 3 tr|W4XWZ5|W4XWZ5_STRPU Uncharacterized protein OS=Strongyloc
4.9 8.4 25.8 18 6.6 0.4 8.2 7 tr|W4YQ71|W4YQ71_STRPU Uncharacterized protein OS=Strongyloc
6.5 8.1 9.8 4.5 8.6 0.0 5.4 6 tr|W4Y1R1|W4Y1R1_STRPU Uncharacterized protein OS=Strongyloc
Domain annotation for each sequence (and alignments):
>> tr|W4YZ96|W4YZ96_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 63.9 0.0 1.5e-20 2.5e-17 1 68 [] 2 112 .. 2 112 .. 0.98
Alignments for each domain:
== domain 1 score: 63.9 bits; conditional E-value: 1.5e-20
BTGGCCC-B-TTTHH.....C-..........................-HHHHHHHHH.TT---.S-SS----S...........CH CS
Trm112p 1 kllllniLaCpackg.....pL..........................dwealvevaa.lglne.lpkekpedy...........el 43
kll++n+L+++ +kg pL dw al+e+a + n lp+++ e+y +
tr|W4YZ96|W4YZ96_STRPU 2 KLLTHNMLTSH-VKGvkngyPLriepentrilevefnpdfiarmipriDWTALYETACgINMNGsLPAQPVENYesdeeflkeahRV 87
789********.*************************************************9999********************99 PP
HTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 44 lleldieegeLvCpncgraYpIkdG 68
lle++i+eg LvCp+ gr +pIk+G
tr|W4YZ96|W4YZ96_STRPU 88 LLEIEIVEGNLVCPESGRKFPIKNG 112
************************9 PP
>> tr|W4Z339|W4Z339_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.5 0.0 3.3e-09 5.5e-06 2 68 .] 50 88 .. 49 88 .. 0.95
Alignments for each domain:
== domain 1 score: 27.5 bits; conditional E-value: 3.3e-09
TGGCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 2 llllniLaCpackgpLdwealvevaalglnelpkekpedyellleldieegeLvCpncgraYpIkdG 68
+ll iL+Cp+ k+pL +d +++eL++ + + aYp+k+G
tr|W4Z339|W4Z339_STRPU 50 TDLLKILVCPISKQPL------------------------R----FDADSNELISDAINVAYPVKNG 88
689*************........................6....*********************9 PP
>> tr|W4YK36|W4YK36_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.6 1.0 0.39 6.6e+02 10 63 .. 131 166 .. 46 167 .. 0.71
2 ? 5.4 3.3 0.027 45 66 66 .. 310 310 .. 185 452 .. 0.64
3 ! 6.9 0.1 0.009 15 41 66 .. 471 534 .. 438 535 .. 0.62
4 ? 0.5 2.3 0.9 1.5e+03 63 63 .. 587 587 .. 537 670 .. 0.55
Alignments for each domain:
== domain 1 score: 1.6 bits; conditional E-value: 0.39
-TTTHHC--HHHHHHHHHTT---S-SS----S............CHHTTEECCCCEEEETTTTEEE CS
Trm112p 10 CpackgpLdwealvevaalglnelpkekpedy............ellleldieegeLvCpncgraY 63
Cp+ + l+++ e + Cp+c+ ++
tr|W4YK36|W4YK36_STRPU 131 CPH----------------------------CdkglsrktiltdH--LRTHTGEKPFKCPHCDKTF 166
222............................13444555555433..6788888888888887766 PP
== domain 2 score: 5.4 bits; conditional E-value: 0.027
E CS
Trm112p 66 k 66
k
tr|W4YK36|W4YK36_STRPU 310 K 310
3 PP
== domain 3 score: 6.9 bits; conditional E-value: 0.009
S......................................CHHTTEECCCCEEEETTTTEEEEEE CS
Trm112p 41 y......................................ellleldieegeLvCpncgraYpIk 66
++ l+++ e + Cp+c+ ++ +k
tr|W4YK36|W4YK36_STRPU 471 CdkgfsvktiltahlrthtgekpfkcsqcdkgfsvktilTAHLKTHTGEKPFKCPRCDKTFSVK 534
234444444444444444444444444557888888888677999999*********9999886 PP
== domain 4 score: 0.5 bits; conditional E-value: 0.9
E CS
Trm112p 63 Y 63
+
tr|W4YK36|W4YK36_STRPU 587 F 587
2 PP
>> tr|W4XUZ6|W4XUZ6_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.6 0.2 0.0013 2.1 30 61 .. 137 163 .. 85 172 .. 0.73
2 ? 8.8 1.8 0.0022 3.7 10 61 .. 183 230 .. 175 239 .. 0.60
Alignments for each domain:
== domain 1 score: 9.6 bits; conditional E-value: 0.0013
---S-SS----S......CHHTTEECCCCEEEETTTTE CS
Trm112p 30 lnelpkekpedy......ellleldieegeLvCpncgr 61
+ + +++ ee eL Cp+c+
tr|W4XUZ6|W4XUZ6_STRPU 137 ED---------EptkpcpN--CKYELEETELSCPDCKN 163
22.........23333442..349************85 PP
== domain 2 score: 8.8 bits; conditional E-value: 0.0022
-TTTHH.C--HHHHHHHHH.TT---S-SS----S......CHHTTEECCCCEEEETTTTE CS
Trm112p 10 Cpackg.pLdwealvevaa.lglnelpkekpedy......ellleldieegeLvCpncgr 61
Cp c L ++ l ++ ++ + + +++ ee eL Cp+c+
tr|W4XUZ6|W4XUZ6_STRPU 183 CPKCDFpAL-YSELTRKPDkTEED---------EptkpcpN--CKYELEETELSCPDCKN 230
555544323.33333333322222.........13333442..349************85 PP
>> tr|W4XNZ3|W4XNZ3_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.4 0.0 1.7 2.8e+03 51 60 .. 10 19 .. 6 23 .. 0.69
2 ? 11.5 0.1 0.00033 0.56 7 61 .. 51 168 .. 50 169 .. 0.68
Alignments for each domain:
== domain 1 score: -0.4 bits; conditional E-value: 1.7
CCEEEETTTT CS
Trm112p 51 egeLvCpncg 60
++L Cp c
tr|W4XNZ3|W4XNZ3_STRPU 10 AQSLECPVCL 19
6788888884 PP
== domain 2 score: 11.5 bits; conditional E-value: 0.00033
C-B-TTTHH..........C-...................................................-HHHHHHHHHTT--- CS
Trm112p 7 iLaCpackg..........pL...................................................dwealvevaalglne 32
+L Cp+c+ +L +w+a+ + l +e
tr|W4XNZ3|W4XNZ3_STRPU 51 MLRCPVCRAktqvpnqdvsKLptnlalksliedmqnryqfcsncnsedrpqavvycqdcdryfcitchnthaQWPAFTSHEVLSMSE 137
8********997777766633556666777777777777777777777777777777777777777777777777777777777777 PP
S-SS----S..CHHTTEECCCCEEEETTTTE CS
Trm112p 33 lpkekpedy..ellleldieegeLvCpncgr 61
+ + k + + + ++ +e++e C+nc+r
tr|W4XNZ3|W4XNZ3_STRPU 138 IVSGKVSVRryRKCRKHRKEDEECFCSNCRR 168
6666666555555666777777777777776 PP
>> tr|W4XXC6|W4XXC6_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 14.6 1.8 3.6e-05 0.061 4 68 .] 9 66 .. 6 66 .. 0.78
2 ? -2.7 0.0 9 1.5e+04 10 19 .. 251 277 .. 249 306 .. 0.55
Alignments for each domain:
== domain 1 score: 14.6 bits; conditional E-value: 3.6e-05
GCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----S...........CHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 4 llniLaCpackgpLdwealvevaalglnelpkekpedy...........ellleldieegeLvCpncgraYpIkdG 68
++ L Cp+c g L+ p+ e+lle+++++++++Cp c+ pI +G
tr|W4XXC6|W4XXC6_STRPU 9 VHKNLECPVCLGFLK------------------DPKILrcfhtfckgclETLLEFHQDKQSITCPICRESTPIANG 66
566789999999992..................222224455677888999*******************999998 PP
== domain 2 score: -2.7 bits; conditional E-value: 9
-TTTHH....C-.............-H CS
Trm112p 10 Cpackg....pL.............dw 19
C ++k+ pL ++
tr|W4XXC6|W4XXC6_STRPU 251 CELVKNglryPLqsmalkahstlceEL 277
667777555555333333333333333 PP
>> tr|W4YJH0|W4YJH0_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.8 0.4 0.00052 0.88 5 59 .. 29 118 .. 26 125 .. 0.74
Alignments for each domain:
== domain 1 score: 10.8 bits; conditional E-value: 0.00052
CCC-B-TTTHH..C-.....................-HHHHHHHHH.TT---.S-SS----S......CHHTTEECCC......... CS
Trm112p 5 lniLaCpackg..pL.....................dwealvevaa.lglne.lpkekpedy......ellleldiee......... 51
+ +L+Cp c++ L d l+++++ +++ p ++ e+y + e
tr|W4YJH0|W4YJH0_STRPU 29 HRLLVCPECRTemALgedgvnglkrnfslqtiidkyDNMTLSQKEEtSRQEAtEPTPTEEKYtvkcerH------TNEvayficetc 109
679********6644999999999999999999986666777777777777767777777776655551......444445666678 PP
.CEEEETTT CS
Trm112p 52 .geLvCpnc 59
g+L+C+ c
tr|W4YJH0|W4YJH0_STRPU 110 wGTLICRVC 118
8*****999 PP
>> tr|W4Z1I9|W4Z1I9_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.6 0.2 0.00015 0.25 38 68 .] 21 65 .. 4 65 .. 0.78
Alignments for each domain:
== domain 1 score: 12.6 bits; conditional E-value: 0.00015
---S..............CHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 38 pedy..............ellleldieegeLvCpncgraYpIkdG 68
ped+ l ++ +++e eL Cpnc + pI dG
tr|W4Z1I9|W4Z1I9_STRPU 21 PEDPkllacghtfckkclALVFQSQMKETELSCPNCSKISPITDG 65
444455566666666667788999********************9 PP
>> tr|W4Y1H3|W4Y1H3_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.4 0.1 0.94 1.6e+03 45 63 .. 138 156 .. 110 159 .. 0.84
2 ? 2.1 0.0 0.28 4.6e+02 47 64 .. 220 237 .. 188 239 .. 0.72
3 ? 5.8 0.1 0.02 34 40 67 .. 296 328 .. 255 329 .. 0.81
4 ? 4.0 0.1 0.071 1.2e+02 41 67 .. 401 437 .. 372 438 .. 0.75
5 ? 1.4 0.1 0.48 8e+02 45 64 .. 561 580 .. 529 582 .. 0.77
Alignments for each domain:
== domain 1 score: 0.4 bits; conditional E-value: 0.94
TTEECCCCEEEETTTTEEE CS
Trm112p 45 leldieegeLvCpncgraY 63
l +d+e + C++c r+Y
tr|W4Y1H3|W4Y1H3_STRPU 138 LGYDKEADCFRCHRCERTY 156
45888899999*******9 PP
== domain 2 score: 2.1 bits; conditional E-value: 0.28
EECCCCEEEETTTTEEEE CS
Trm112p 47 ldieegeLvCpncgraYp 64
l+++e+ +vC cg ++p
tr|W4Y1H3|W4Y1H3_STRPU 220 LCDKEEHFVCVTCGKHFP 237
678999***********9 PP
== domain 3 score: 5.8 bits; conditional E-value: 0.02
-S.....CHHTTEECCCCEEEETTTTEEEEEET CS
Trm112p 40 dy.....ellleldieegeLvCpncgraYpIkd 67
+ ++ + +++++g++ C+ c r + +d
tr|W4Y1H3|W4Y1H3_STRPU 296 SHlsrhmHTAHGFERVRGKILCTGCSRKFLLED 328
22555569999*****************98777 PP
== domain 4 score: 4.0 bits; conditional E-value: 0.071
S..........CHHTTEECCCCEEEETTTTEEEEEET CS
Trm112p 41 y..........ellleldieegeLvCpncgraYpIkd 67
y ++ + +++++g++vC c + +d
tr|W4Y1H3|W4Y1H3_STRPU 401 YssrshlsrhmHTVHGFERVRGKIVCMGCSKMFCLED 437
144455555569999**************99886655 PP
== domain 5 score: 1.4 bits; conditional E-value: 0.48
TTEECCCCEEEETTTTEEEE CS
Trm112p 45 leldieegeLvCpncgraYp 64
++ + ++ ++ C +c++++p
tr|W4Y1H3|W4Y1H3_STRPU 561 HNRHPKSSVFKCDHCDQTFP 580
357889999**********9 PP
>> tr|W4XXC5|W4XXC5_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.2 3.4 0.00084 1.4 4 68 .] 9 66 .. 6 66 .. 0.77
2 ? -2.6 0.0 8.3 1.4e+04 10 39 .. 252 276 .. 251 305 .. 0.52
Alignments for each domain:
== domain 1 score: 10.2 bits; conditional E-value: 0.00084
GCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----S...........CHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 4 llniLaCpackgpLdwealvevaalglnelpkekpedy...........ellleldieegeLvCpncgraYpIkdG 68
++ L Cp+c g L+ p+ e+lle +++++++ Cp c+ pI +G
tr|W4XXC5|W4XXC5_STRPU 9 VHKNLECPICLGFLK------------------DPKILrcfhtfckgclETLLECHQDKQSISCPVCRESTPIPNG 66
566789999999882..................222224455677888999*****************99999887 PP
== domain 2 score: -2.6 bits; conditional E-value: 8.3
-TTTHH....C--HHHHHHHHHTT---S-SS--- CS
Trm112p 10 Cpackg....pLdwealvevaalglnelpkekpe 39
C ++k+ pL+ al +++e
tr|W4XXC5|W4XXC5_STRPU 252 CELVKNglrgPLQNVALKAHN---------TLCE 276
555555555577222222222.........2222 PP
>> tr|W4XSM9|W4XSM9_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.2 0.0 1.1 1.9e+03 31 63 .. 128 155 .. 111 156 .. 0.77
2 ? 6.6 0.2 0.011 18 41 63 .. 427 492 .. 391 493 .. 0.60
3 ? -2.8 0.0 9.2 1.5e+04 54 63 .. 540 549 .. 532 552 .. 0.72
Alignments for each domain:
== domain 1 score: 0.2 bits; conditional E-value: 1.1
--S-SS----SCHHTTEECCCCEEEETTTTEEE CS
Trm112p 31 nelpkekpedyellleldieegeLvCpncgraY 63
++lp ++ +d+ l+++ g+ C cg a+
tr|W4XSM9|W4XSM9_STRPU 128 ESLPCQPKQDA-----LKDKGGTVKCAGCGKAF 155
44666666666.....78999*********999 PP
== domain 2 score: 6.6 bits; conditional E-value: 0.011
S.............................................CHHTTEECCCCEEEETTTTEEE CS
Trm112p 41 y.............................................ellleldieegeLvCpncgraY 63
+ + +++ e +vC +cgra+
tr|W4XSM9|W4XSM9_STRPU 427 VceicdkvfqsihtllthkktvhnelkpfvcdichkdfkqlgnmktH--RRTHTGEKPFVCQECGRAF 492
44444555555555555555555555555555556666666666442..5689999***********9 PP
== domain 3 score: -2.8 bits; conditional E-value: 9.2
EEETTTTEEE CS
Trm112p 54 LvCpncgraY 63
+ Cp cg ++
tr|W4XSM9|W4XSM9_STRPU 540 FACPVCGKTF 549
5677777766 PP
>> tr|W4YV04|W4YV04_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.2 0.1 0.03 51 45 64 .. 374 393 .. 310 394 .. 0.81
2 ? -1.1 0.0 2.8 4.7e+03 53 64 .. 458 469 .. 429 471 .. 0.85
3 ? 3.2 0.1 0.13 2.1e+02 33 63 .. 646 687 .. 625 688 .. 0.74
4 ? -2.6 0.0 8.4 1.4e+04 54 66 .. 734 746 .. 720 747 .. 0.88
Alignments for each domain:
== domain 1 score: 5.2 bits; conditional E-value: 0.03
TTEECCCCEEEETTTTEEEE CS
Trm112p 45 leldieegeLvCpncgraYp 64
l++++eeg ++C++c +p
tr|W4YV04|W4YV04_STRPU 374 LNYNEEEGNFQCNSCENQFP 393
5699***********99988 PP
== domain 2 score: -1.1 bits; conditional E-value: 2.8
EEEETTTTEEEE CS
Trm112p 53 eLvCpncgraYp 64
+++C+ cg +p
tr|W4YV04|W4YV04_STRPU 458 QFICTVCGKKFP 469
789******999 PP
== domain 3 score: 3.2 bits; conditional E-value: 0.13
S-SS----S...........CHHTTEECCCCEEEETTTTEEE CS
Trm112p 33 lpkekpedy...........ellleldieegeLvCpncgraY 63
++++k+ + e e+++ +g++ C+ c r++
tr|W4YV04|W4YV04_STRPU 646 PRPYKCRHCprryrsrmaayEHEKETHEGKGSFKCNLCPRVF 687
555555555777777777773345799999********9998 PP
== domain 4 score: -2.6 bits; conditional E-value: 8.4
EEETTTTEEEEEE CS
Trm112p 54 LvCpncgraYpIk 66
+ C+ cg ++I+
tr|W4YV04|W4YV04_STRPU 734 FKCEICGKGFRIR 746
57999**999998 PP
>> tr|W4XIY6|W4XIY6_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.5 2.9 0.0028 4.8 4 68 .] 9 66 .. 6 66 .. 0.76
2 ? -2.4 0.0 7 1.2e+04 10 39 .. 252 276 .. 251 309 .. 0.51
Alignments for each domain:
== domain 1 score: 8.5 bits; conditional E-value: 0.0028
GCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----S...........CHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 4 llniLaCpackgpLdwealvevaalglnelpkekpedy...........ellleldieegeLvCpncgraYpIkdG 68
++ L Cp+c g L+ + + e+ le +++++++ Cp c+ pI +G
tr|W4XIY6|W4XIY6_STRPU 9 VHKNLECPVCLGFLKDPKI------------------LtcfhtfckgclETVLECHQDKQSISCPVCRESTPIPNG 66
5667899999998822222..................234456777779999****************99999887 PP
== domain 2 score: -2.4 bits; conditional E-value: 7
-TTTHH....C--HHHHHHHHHTT---S-SS--- CS
Trm112p 10 Cpackg....pLdwealvevaalglnelpkekpe 39
C ++k+ pL+ al +++e
tr|W4XIY6|W4XIY6_STRPU 252 CELVKNglrgPLQNVALKAHN---------TLCE 276
555555555577222222222.........2222 PP
>> tr|W4XXC4|W4XXC4_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.5 2.9 0.0028 4.8 4 68 .] 9 66 .. 6 66 .. 0.76
2 ? -2.4 0.0 7 1.2e+04 10 39 .. 252 276 .. 251 309 .. 0.51
Alignments for each domain:
== domain 1 score: 8.5 bits; conditional E-value: 0.0028
GCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----S...........CHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 4 llniLaCpackgpLdwealvevaalglnelpkekpedy...........ellleldieegeLvCpncgraYpIkdG 68
++ L Cp+c g L+ + + e+ le +++++++ Cp c+ pI +G
tr|W4XXC4|W4XXC4_STRPU 9 VHKNLECPVCLGFLKDPKI------------------LtcfhtfckgclETVLECHQDKQSISCPVCRESTPIPNG 66
5667899999998822222..................234456777779999****************99999887 PP
== domain 2 score: -2.4 bits; conditional E-value: 7
-TTTHH....C--HHHHHHHHHTT---S-SS--- CS
Trm112p 10 Cpackg....pLdwealvevaalglnelpkekpe 39
C ++k+ pL+ al +++e
tr|W4XXC4|W4XXC4_STRPU 252 CELVKNglrgPLQNVALKAHN---------TLCE 276
555555555577222222222.........2222 PP
>> tr|W4XWZ5|W4XWZ5_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.0 0.1 0.035 59 45 64 .. 374 393 .. 310 394 .. 0.81
2 ? -1.3 0.0 3.3 5.5e+03 53 64 .. 458 469 .. 429 471 .. 0.86
3 ? 3.0 0.1 0.15 2.5e+02 33 63 .. 646 687 .. 625 688 .. 0.74
Alignments for each domain:
== domain 1 score: 5.0 bits; conditional E-value: 0.035
TTEECCCCEEEETTTTEEEE CS
Trm112p 45 leldieegeLvCpncgraYp 64
l++++eeg ++C++c +p
tr|W4XWZ5|W4XWZ5_STRPU 374 LNYNEEEGNFQCNSCENQFP 393
5699***********99988 PP
== domain 2 score: -1.3 bits; conditional E-value: 3.3
EEEETTTTEEEE CS
Trm112p 53 eLvCpncgraYp 64
+++C+ cg +p
tr|W4XWZ5|W4XWZ5_STRPU 458 QFICTVCGKKFP 469
789******999 PP
== domain 3 score: 3.0 bits; conditional E-value: 0.15
S-SS----S...........CHHTTEECCCCEEEETTTTEEE CS
Trm112p 33 lpkekpedy...........ellleldieegeLvCpncgraY 63
++++k+ + e e+++ +g++ C+ c r++
tr|W4XWZ5|W4XWZ5_STRPU 646 PRPYKCRHCprryrsrmaayEHEKETHEGKGSFKCNLCPRVF 687
555555555777777777773345799999********9998 PP
>> tr|W4YQ71|W4YQ71_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.6 0.4 0.011 18 49 64 .. 475 490 .. 371 491 .. 0.84
2 ? 4.5 0.0 0.049 83 48 64 .. 509 525 .. 494 526 .. 0.83
3 ? 3.6 0.1 0.093 1.6e+02 41 63 .. 670 709 .. 643 710 .. 0.70
4 ? -1.5 0.1 3.6 6.1e+03 42 63 .. 746 767 .. 721 768 .. 0.59
5 ? 5.6 0.0 0.022 38 6 66 .. 812 909 .. 808 910 .. 0.62
6 ? -1.9 0.4 5 8.4e+03 48 63 .. 1298 1313 .. 1245 1314 .. 0.68
7 ? -0.6 0.4 2 3.3e+03 36 63 .. 1362 1404 .. 1328 1407 .. 0.70
Alignments for each domain:
== domain 1 score: 6.6 bits; conditional E-value: 0.011
CCCCEEEETTTTEEEE CS
Trm112p 49 ieegeLvCpncgraYp 64
+e+g+LvCp c+ a+p
tr|W4YQ71|W4YQ71_STRPU 475 REDGKLVCPYCNAAFP 490
578************9 PP
== domain 2 score: 4.5 bits; conditional E-value: 0.049
ECCCCEEEETTTTEEEE CS
Trm112p 48 dieegeLvCpncgraYp 64
+++ +L+Cp+c aYp
tr|W4YQ71|W4YQ71_STRPU 509 AKDRSKLQCPHCTKAYP 525
567899**********9 PP
== domain 3 score: 3.6 bits; conditional E-value: 0.093
S.................CHHTTEECCCCEEEETTTTEEE CS
Trm112p 41 y.................ellleldieegeLvCpncgraY 63
+ ++l ++ ++ e vC++cg +
tr|W4YQ71|W4YQ71_STRPU 670 VscptchnefsnkeqlivHVLTHFKTVSKEYVCKDCGKSF 709
04445555555555667899999*************9887 PP
== domain 4 score: -1.5 bits; conditional E-value: 3.6
CHHTTEECCCCEEEETTTTEEE CS
Trm112p 42 ellleldieegeLvCpncgraY 63
+ ++++ e + C++cg +Y
tr|W4YQ71|W4YQ71_STRPU 746 HFAVKHSNEFKIFSCTKCGVVY 767
5555666666667888888888 PP
== domain 5 score: 5.6 bits; conditional E-value: 0.022
CC-B-TTTHH......C-...............-HHHHHHHHHTT---S-SS----S.........................CHHTT CS
Trm112p 6 niLaCpackg......pL...............dwealvevaalglnelpkekpedy.........................ellle 46
n L Cp+c L l ++ p+e+pe++ ++ +
tr|W4YQ71|W4YQ71_STRPU 812 NQLRCPFCNApyrsqeALdihlqaahdhvggssT---------LAKPDGPAETPEEVhgrtsvdsakkssiksegsakspktKEDIV 889
6799999999555555335544442222222220.........33333344444444777777777777777777777777733455 PP
EECCCCEEEETTTTEEEEEE CS
Trm112p 47 ldieegeLvCpncgraYpIk 66
+d++ g ++C c+ +p k
tr|W4YQ71|W4YQ71_STRPU 890 TDEVAGCFTCQICDVMFPLK 909
9****************975 PP
== domain 6 score: -1.9 bits; conditional E-value: 5
ECCCCEEEETTTTEEE CS
Trm112p 48 dieegeLvCpncgraY 63
+ +e ++ C +c++ +
tr|W4YQ71|W4YQ71_STRPU 1298 CHQESKFNCGECKQSF 1313
4577888888888877 PP
== domain 7 score: -0.6 bits; conditional E-value: 2
S----S...............CHHTTEECCCCEEEETTTTEEE CS
Trm112p 36 ekpedy...............ellleldieegeLvCpncgraY 63
ekp++y + ++++ e + +C +c+ ++
tr|W4YQ71|W4YQ71_STRPU 1362 EKPKTYdctkcgknfpclsnlQGHMRIHHEGKKYTCGECNKVF 1404
4555556667778888888885558899999999999999988 PP
>> tr|W4Y1R1|W4Y1R1_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.6 0.0 0.0027 4.5 16 68 .] 585 644 .. 566 644 .. 0.63
2 ? -1.2 0.1 3 5.1e+03 31 64 .. 965 994 .. 954 996 .. 0.81
3 ? -0.4 0.0 1.7 2.8e+03 47 63 .. 1265 1281 .. 1233 1282 .. 0.72
4 ? -1.6 0.0 4.1 6.9e+03 55 64 .. 1537 1546 .. 1502 1546 .. 0.80
5 ? -2.0 0.0 5.4 9e+03 10 19 .. 1609 1636 .. 1608 1676 .. 0.61
6 ? -1.3 0.1 3.1 5.3e+03 46 63 .. 1843 1860 .. 1803 1861 .. 0.78
Alignments for each domain:
== domain 1 score: 8.6 bits; conditional E-value: 0.0027
C--HHHHHHHHH.TT---S-SS----S.........CHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 16 pLdwealvevaa.lglnelpkekpedy.........ellleldieegeLvCpncgraYpIkdG 68
pL +++ v ++ + +++ p+++++ + e +++e+eL Cp cg ++ ++G
tr|W4Y1R1|W4Y1R1_STRPU 585 PLNLSMKVVKSSdEAISDEPMDLSSGEththvsesiD---EEKKIEEELSCPICGKTFLCRNG 644
4544444444444444444444444448777764431...457778************99988 PP
== domain 2 score: -1.2 bits; conditional E-value: 3
--S-SS----SCHHTTEECCCCEEEETTTTEEEE CS
Trm112p 31 nelpkekpedyellleldieegeLvCpncgraYp 64
+e+ +e+++ + ++++g+ +C+ c+ ++p
tr|W4Y1R1|W4Y1R1_STRPU 965 EEIEEEPCDLSN----ANKKKGTHTCKYCKKVFP 994
557777777665....88999999*********9 PP
== domain 3 score: -0.4 bits; conditional E-value: 1.7
EECCCCEEEETTTTEEE CS
Trm112p 47 ldieegeLvCpncgraY 63
+d+ + +L Cp+c +++
tr|W4Y1R1|W4Y1R1_STRPU 1265 YDEGSDALMCPHCPLHF 1281
4777899******8887 PP
== domain 4 score: -1.6 bits; conditional E-value: 4.1
EETTTTEEEE CS
Trm112p 55 vCpncgraYp 64
Cp cgr +p
tr|W4Y1R1|W4Y1R1_STRPU 1537 CCPYCGRRFP 1546
59*****998 PP
== domain 5 score: -2.0 bits; conditional E-value: 5.4
-TTTHH.......C-...........-H CS
Trm112p 10 Cpackg.......pL...........dw 19
Cp ckg +L d+
tr|W4Y1R1|W4Y1R1_STRPU 1609 CPECKGfkcttrtQLqghyeqnhpqiDF 1636
9999998777666663333333333333 PP
== domain 6 score: -1.3 bits; conditional E-value: 3.1
TEECCCCEEEETTTTEEE CS
Trm112p 46 eldieegeLvCpncgraY 63
+++++e + C++c+ ++
tr|W4Y1R1|W4Y1R1_STRPU 1843 KVHEVEHPFHCTDCKATF 1860
689999********9887 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (68 nodes)
Target sequences: 28594 (14266044 residues searched)
Passed MSV filter: 1247 (0.0436105); expected 571.9 (0.02)
Passed bias filter: 975 (0.0340981); expected 571.9 (0.02)
Passed Vit filter: 103 (0.00360215); expected 28.6 (0.001)
Passed Fwd filter: 26 (0.000909282); expected 0.3 (1e-05)
Initial search space (Z): 28594 [actual number of targets]
Domain search space (domZ): 17 [number of targets reported over threshold]
# CPU time: 0.23u 0.01s 00:00:00.24 Elapsed: 00:00:00.11
# Mc/sec: 8819.01
//
[ok]