# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Trm112p.hmm.txt
# target sequence database: proteomes/Tetrahymena_thermophila.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Trm112p [M=68]
Accession: PF03966.15
Description: Trm112p-like protein
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.9e-15 56.7 1.4 1.1e-13 52.1 1.4 2.1 1 tr|I7MHZ4|I7MHZ4_TETTS tRNA methyltransferase-like protein O
0.0089 17.2 0.1 0.026 15.7 0.0 1.8 2 tr|W7X8F5|W7X8F5_TETTS Uncharacterized protein OS=Tetrahymen
------ inclusion threshold ------
1 10.5 5.4 18 6.6 0.2 3.4 2 tr|Q229A4|Q229A4_TETTS RBR-type E3 ubiquitin transferase OS=
Domain annotation for each sequence (and alignments):
>> tr|I7MHZ4|I7MHZ4_TETTS tRNA methyltransferase-like protein OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=TT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 52.1 1.4 1.2e-17 1.1e-13 4 68 .] 5 113 .. 2 113 .. 0.81
Alignments for each domain:
== domain 1 score: 52.1 bits; conditional E-value: 1.2e-17
GCCC-B-TTTHH......C-..........................-HHHHHHHHH.TT---.S-SS----S...........CHHT CS
Trm112p 4 llniLaCpackg......pL..........................dwealvevaa.lglne.lpkekpedy...........elll 45
+n+L+C+ +k+ pL dw+al +++ l n+ p++ + l+
tr|I7MHZ4|I7MHZ4_TETTS 5 SHNLLQCN-VKNcksnnfPLkiqvdksniincefrkeplvklipklDWNALAITVHnLAKNKeFPEKFSPALlddqkfmqelhRILM 90
57777777.777777777777777777777777777777999*********9999987777656665555558999*******99** PP
TEECCCCEEEETTTTEEEEEETT CS
Trm112p 46 eldieegeLvCpncgraYpIkdG 68
e++i+eg+L+C+ c+ YpIk+G
tr|I7MHZ4|I7MHZ4_TETTS 91 ETHIIEGALICEGCNKRYPIKNG 113
**********************9 PP
>> tr|W7X8F5|W7X8F5_TETTS Uncharacterized protein OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=TTHERM_0001449
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.7 0.0 0.74 6.6e+03 52 66 .. 3 17 .. 1 18 [. 0.75
2 ! 15.7 0.0 2.8e-06 0.026 2 68 .] 32 70 .. 31 70 .. 0.92
Alignments for each domain:
== domain 1 score: -1.7 bits; conditional E-value: 0.74
CEEEETTTTEEEEEE CS
Trm112p 52 geLvCpncgraYpIk 66
+ L ++ ++r++ I
tr|W7X8F5|W7X8F5_TETTS 3 QYLLNHITKRTFCII 17
567788899999886 PP
== domain 2 score: 15.7 bits; conditional E-value: 2.8e-06
TGGCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 2 llllniLaCpackgpLdwealvevaalglnelpkekpedyellleldieegeLvCpncgraYpIkdG 68
+ l ++ Cp+ k+ L ++d+e+ +L++ + g+ Y k+G
tr|W7X8F5|W7X8F5_TETTS 32 ESILKFIRCPISKQNL----------------------------QYDKEKKALISDKLGIRYDLKNG 70
56899***********............................5*****************99998 PP
>> tr|Q229A4|Q229A4_TETTS RBR-type E3 ubiquitin transferase OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=TTHE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.3 1.1 0.01 94 46 67 .. 292 313 .. 172 314 .. 0.84
2 ? 6.6 0.2 0.002 18 34 63 .. 348 374 .. 331 377 .. 0.79
Alignments for each domain:
== domain 1 score: 4.3 bits; conditional E-value: 0.01
TEECCCCEEEETTTTEEEEEET CS
Trm112p 46 eldieegeLvCpncgraYpIkd 67
++++++ L Cpn + ++pI++
tr|Q229A4|Q229A4_TETTS 292 QINEKKFPLKCPNSNCIFPIEQ 313
455666679***********85 PP
== domain 2 score: 6.6 bits; conditional E-value: 0.002
-SS----SCHHTTEECCCCEEEETTTTEEE CS
Trm112p 34 pkekpedyellleldieegeLvCpncgraY 63
p +++e++ + +++++++L Cp+c+ Y
tr|Q229A4|Q229A4_TETTS 348 PTPNCEFA---FIIEKDQNQLSCPKCNKSY 374
66666666...3478999*********999 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (68 nodes)
Target sequences: 26971 (16912921 residues searched)
Passed MSV filter: 1009 (0.0374106); expected 539.4 (0.02)
Passed bias filter: 695 (0.0257684); expected 539.4 (0.02)
Passed Vit filter: 56 (0.0020763); expected 27.0 (0.001)
Passed Fwd filter: 3 (0.000111231); expected 0.3 (1e-05)
Initial search space (Z): 26971 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.16u 0.01s 00:00:00.17 Elapsed: 00:00:00.10
# Mc/sec: 11500.79
//
[ok]