# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Trm112p.hmm.txt
# target sequence database:        proteomes/Trichomonas_vaginalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Trm112p  [M=68]
Accession:   PF03966.15
Description: Trm112p-like protein
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
  ------ inclusion threshold ------
      0.015   17.3   0.0         38    6.4   0.8    4.1  3  tr|A2ELM0|A2ELM0_TRIVA  Uncharacterized protein OS=Trichomona


Domain annotation for each sequence (and alignments):
>> tr|A2ELM0|A2ELM0_TRIVA  Uncharacterized protein OS=Trichomonas vaginalis OX=5722 GN=TVAG_149530 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.029   1.4e+03      18      51 ..      82     117 ..      54     148 .. 0.63
   2 ?    3.0   0.0    0.0088   4.4e+02      10      18 ..     165     215 ..     164     283 .. 0.41
   3 ?    6.4   0.8   0.00075        38       8      34 ..     327     355 ..     326     378 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.029
                             -HHHHHHHHH.TT---.S-SS----SCHHTTEECCC CS
                 Trm112p  18 dwealvevaa.lglne.lpkekpedyellleldiee 51 
                              ++  ++ a+ lgl e +p+++++++ + ++++ e+
  tr|A2ELM0|A2ELM0_TRIVA  82 NYNKNLTLAEkLGLVEpPPAPLTDEQFETVKIEAEK 117
                             555555668889999955555555554445555554 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.0088
                             -TTTHHC-..........................................- CS
                 Trm112p  10 CpackgpL..........................................d 18 
                             Cp+c++p                                            
  tr|A2ELM0|A2ELM0_TRIVA 165 CPVCRQPYefvrvkaesaynercattiqrvfrgflvrnklgelapegtelH 215
                             777777653333333333333333333333333333333333333333330 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.00075
                             -B-TTTHHC--HHHHHHHHH.TT---.S- CS
                 Trm112p   8 LaCpackgpLdwealvevaa.lglne.lp 34 
                             L+Cp+c++p +++  +e+++ ++ ++   
  tr|A2ELM0|A2ELM0_TRIVA 327 LSCPCCRSPFQYKPWIEKVKeEKDEKeEE 355
                             89********9999999888444443222 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (68 nodes)
Target sequences:                        50190  (17055200 residues searched)
Passed MSV filter:                      1542  (0.0307233); expected 1003.8 (0.02)
Passed bias filter:                     1192  (0.0237498); expected 1003.8 (0.02)
Passed Vit filter:                        59  (0.00117553); expected 50.2 (0.001)
Passed Fwd filter:                         1  (1.99243e-05); expected 0.5 (1e-05)
Initial search space (Z):              50190  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.01s 00:00:00.17 Elapsed: 00:00:00.10
# Mc/sec: 11597.54
//
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