# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Trm112p.hmm.txt
# target sequence database:        proteomes/Trichoplax_adhaerens.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Trm112p  [M=68]
Accession:   PF03966.15
Description: Trm112p-like protein
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    2.5e-12   46.6   0.0    3.4e-12   46.2   0.0    1.2  1  tr|B3RJT0|B3RJT0_TRIAD  Uncharacterized protein OS=Trichoplax
  ------ inclusion threshold ------
        2.1    8.4   8.4        0.8    9.7   4.1    2.5  3  tr|B3RJ02|B3RJ02_TRIAD  Uncharacterized protein OS=Trichoplax


Domain annotation for each sequence (and alignments):
>> tr|B3RJT0|B3RJT0_TRIAD  Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_52665 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   5.9e-16   3.4e-12       2      68 .]       3     112 ..       2     112 .. 0.95

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 5.9e-16
                             TGGCCC-B-TTTHH.....C-..........................-HHHHHHHHH.TT---.S-SS----S...........CHH CS
                 Trm112p   2 llllniLaCpackg.....pL..........................dwealvevaa.lglne.lpkekpedy...........ell 44 
                             ll++n+L+++ +kg     pL                           w++l+++a+  g    +p+++  ++           ++l
  tr|B3RJT0|B3RJT0_TRIAD   3 LLTHNMLTSH-VKGaesgyPLileaaevilrnvdfnpefikrmlskvNWDVLYQTAKaIGHLNdIPEQLQPNVendeeflrkahHVL 88 
                             79********.9999******************************************9765555***99999999************ PP

                             TTEECCCCEEEETTTTEEEEEETT CS
                 Trm112p  45 leldieegeLvCpncgraYpIkdG 68 
                             le++++eg L+Cp  +  + I++G
  tr|B3RJT0|B3RJT0_TRIAD  89 LEVEVKEGHLICPTSKKKFQISNG 112
                             **********************99 PP

>> tr|B3RJ02|B3RJ02_TRIAD  Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_52519 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.78   4.5e+03       8      15 ..     323     330 ..     322     359 .. 0.80
   2 ?    9.7   4.1   0.00014       0.8       7      63 ..     380     463 ..     379     464 .. 0.91
   3 ?   -2.3   0.0      0.78   4.5e+03       7      42 ..     499     551 ..     496     570 .. 0.53

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.78
                             -B-TTTHH CS
                 Trm112p   8 LaCpackg 15 
                             L Cp+c  
  tr|B3RJ02|B3RJ02_TRIAD 323 LNCPVCQM 330
                             78998876 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00014
                             C-B-TTTHH........C-.................-HHHHHHHHH.TT---.S-SS----SCHHTTEECCCCEEEETTTTEEE CS
                 Trm112p   7 iLaCpackg........pL.................dwealvevaa.lglne.lpkekpedyellleldieegeLvCpncgraY 63 
                             +L Cp+c +        pL                 +w+ l + ++ + + + l ++k e+  l +  d e+  L+Cp+c+  +
  tr|B3RJ02|B3RJ02_TRIAD 380 FLWCPHCSNgferdpfsPLkvqcnlclkftcykcriKWNKLHDDVNcEDYRKrLSEKKNEEELLSILNDLEKTGLQCPSCNCKF 463
                             899******9*99999988999999*********************99999999999999997777789999********9766 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.78
                             C-B-TTTHH.....C-.......-HHHHHHHHH.TT---.S-SS----S....C CS
                 Trm112p   7 iLaCpackg.....pL.......dwealvevaa.lglne.lpkekpedy....e 42 
                             +L C  + g     p        dw++   ++  +++n+     +p+d+    +
  tr|B3RJ02|B3RJ02_TRIAD 499 FLNCR-IDGlhahhPRnclyylrDWSVDRLQKLlRENNKeFDTSMPSDHdgrcH 551
                             66666.444455554444455566666555555544444455555555455542 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (68 nodes)
Target sequences:                        11518  (5222075 residues searched)
Passed MSV filter:                       409  (0.0355096); expected 230.4 (0.02)
Passed bias filter:                      310  (0.0269144); expected 230.4 (0.02)
Passed Vit filter:                        34  (0.0029519); expected 11.5 (0.001)
Passed Fwd filter:                         2  (0.000173641); expected 0.1 (1e-05)
Initial search space (Z):              11518  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.06u 0.00s 00:00:00.06 Elapsed: 00:00:00.04
# Mc/sec: 8877.53
//
[ok]