# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Trm112p.hmm.txt
# target sequence database: proteomes/Trichoplax_adhaerens.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Trm112p [M=68]
Accession: PF03966.15
Description: Trm112p-like protein
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.5e-12 46.6 0.0 3.4e-12 46.2 0.0 1.2 1 tr|B3RJT0|B3RJT0_TRIAD Uncharacterized protein OS=Trichoplax
------ inclusion threshold ------
2.1 8.4 8.4 0.8 9.7 4.1 2.5 3 tr|B3RJ02|B3RJ02_TRIAD Uncharacterized protein OS=Trichoplax
Domain annotation for each sequence (and alignments):
>> tr|B3RJT0|B3RJT0_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_52665 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 46.2 0.0 5.9e-16 3.4e-12 2 68 .] 3 112 .. 2 112 .. 0.95
Alignments for each domain:
== domain 1 score: 46.2 bits; conditional E-value: 5.9e-16
TGGCCC-B-TTTHH.....C-..........................-HHHHHHHHH.TT---.S-SS----S...........CHH CS
Trm112p 2 llllniLaCpackg.....pL..........................dwealvevaa.lglne.lpkekpedy...........ell 44
ll++n+L+++ +kg pL w++l+++a+ g +p+++ ++ ++l
tr|B3RJT0|B3RJT0_TRIAD 3 LLTHNMLTSH-VKGaesgyPLileaaevilrnvdfnpefikrmlskvNWDVLYQTAKaIGHLNdIPEQLQPNVendeeflrkahHVL 88
79********.9999******************************************9765555***99999999************ PP
TTEECCCCEEEETTTTEEEEEETT CS
Trm112p 45 leldieegeLvCpncgraYpIkdG 68
le++++eg L+Cp + + I++G
tr|B3RJT0|B3RJT0_TRIAD 89 LEVEVKEGHLICPTSKKKFQISNG 112
**********************99 PP
>> tr|B3RJ02|B3RJ02_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_52519 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.3 0.0 0.78 4.5e+03 8 15 .. 323 330 .. 322 359 .. 0.80
2 ? 9.7 4.1 0.00014 0.8 7 63 .. 380 463 .. 379 464 .. 0.91
3 ? -2.3 0.0 0.78 4.5e+03 7 42 .. 499 551 .. 496 570 .. 0.53
Alignments for each domain:
== domain 1 score: -2.3 bits; conditional E-value: 0.78
-B-TTTHH CS
Trm112p 8 LaCpackg 15
L Cp+c
tr|B3RJ02|B3RJ02_TRIAD 323 LNCPVCQM 330
78998876 PP
== domain 2 score: 9.7 bits; conditional E-value: 0.00014
C-B-TTTHH........C-.................-HHHHHHHHH.TT---.S-SS----SCHHTTEECCCCEEEETTTTEEE CS
Trm112p 7 iLaCpackg........pL.................dwealvevaa.lglne.lpkekpedyellleldieegeLvCpncgraY 63
+L Cp+c + pL +w+ l + ++ + + + l ++k e+ l + d e+ L+Cp+c+ +
tr|B3RJ02|B3RJ02_TRIAD 380 FLWCPHCSNgferdpfsPLkvqcnlclkftcykcriKWNKLHDDVNcEDYRKrLSEKKNEEELLSILNDLEKTGLQCPSCNCKF 463
899******9*99999988999999*********************99999999999999997777789999********9766 PP
== domain 3 score: -2.3 bits; conditional E-value: 0.78
C-B-TTTHH.....C-.......-HHHHHHHHH.TT---.S-SS----S....C CS
Trm112p 7 iLaCpackg.....pL.......dwealvevaa.lglne.lpkekpedy....e 42
+L C + g p dw++ ++ +++n+ +p+d+ +
tr|B3RJ02|B3RJ02_TRIAD 499 FLNCR-IDGlhahhPRnclyylrDWSVDRLQKLlRENNKeFDTSMPSDHdgrcH 551
66666.444455554444455566666555555544444455555555455542 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (68 nodes)
Target sequences: 11518 (5222075 residues searched)
Passed MSV filter: 409 (0.0355096); expected 230.4 (0.02)
Passed bias filter: 310 (0.0269144); expected 230.4 (0.02)
Passed Vit filter: 34 (0.0029519); expected 11.5 (0.001)
Passed Fwd filter: 2 (0.000173641); expected 0.1 (1e-05)
Initial search space (Z): 11518 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.06u 0.00s 00:00:00.06 Elapsed: 00:00:00.04
# Mc/sec: 8877.53
//
[ok]