# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Trm112p.hmm.txt
# target sequence database:        proteomes/Trypanosoma_brucei.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Trm112p  [M=68]
Accession:   PF03966.15
Description: Trm112p-like protein
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    5.2e-11   41.9   0.0      1e-10   41.0   0.0    1.5  1  tr|Q57X98|Q57X98_TRYB2  Uncharacterized protein OS=Trypanosom


Domain annotation for each sequence (and alignments):
>> tr|Q57X98|Q57X98_TRYB2  Uncharacterized protein OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   1.2e-14     1e-10       2      67 ..       3     117 ..       2     117 .. 0.89

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 1.2e-14
                             TGGCCC-B-TTTHH.C-..........................-HHHHHHHHHTT---S-SS----S.................... CS
                 Trm112p   2 llllniLaCpackg.pL..........................dwealvevaalglnelpkekpedy.................... 41 
                             ll++n+L+C +c + pL                          d+  lve+ +    +l+++k +++                    
  tr|Q57X98|Q57X98_TRYB2   3 LLTHNFLCCIQCQSfPLqlqatelevlaseynpefirtmlarmDYTYLVEAFN----SLRSQKQDQVdagnvlpekledvdlsddsr 85 
                             79*************99889999999************999998888888876....88888888888889999999999******* PP

                             ......CHHTTEECCCCEEEETTTTEEEEEET CS
                 Trm112p  42 ......ellleldieegeLvCpncgraYpIkd 67 
                                   ++   + i eg+L Cp c+r YpI++
  tr|Q57X98|Q57X98_TRYB2  86 dlkavhYAIQDVAIREGALRCPQCKREYPIRE 117
                             *****85555689999**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (68 nodes)
Target sequences:                         8561  (4332363 residues searched)
Passed MSV filter:                       263  (0.0307207); expected 171.2 (0.02)
Passed bias filter:                      213  (0.0248803); expected 171.2 (0.02)
Passed Vit filter:                        17  (0.00198575); expected 8.6 (0.001)
Passed Fwd filter:                         1  (0.000116809); expected 0.1 (1e-05)
Initial search space (Z):               8561  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.03
# Mc/sec: 9820.02
//
[ok]