# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Trm112p.hmm.txt # target sequence database: proteomes/Xenopus_tropicalis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Trm112p [M=68] Accession: PF03966.15 Description: Trm112p-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-13 49.4 0.0 9.6e-13 48.9 0.0 1.2 1 tr|A4QNG4|A4QNG4_XENTR tRNA methyltransferase subunit 1 1.6e-06 29.0 0.0 5.2e-06 27.3 0.0 1.9 1 sp|Q5M8Z2|PREY_XENTR Protein preY, mitochondrial OS=X 0.0017 19.3 3.9 5.6 8.0 0.2 4.4 4 tr|K9J7M0|K9J7M0_XENTR Uncharacterized protein (Fragmen 0.0042 18.0 51.9 1.1 10.3 0.0 12.9 12 tr|F7DL61|F7DL61_XENTR Uncharacterized protein (Fragmen 0.0097 16.9 12.2 0.038 15.0 0.4 4.6 4 tr|F6PYH5|F6PYH5_XENTR Zinc finger protein OS=Xenopus t ------ inclusion threshold ------ 0.025 15.6 0.7 6.6 7.8 0.3 3.9 3 tr|F6R0B0|F6R0B0_XENTR Zinc finger protein 474 OS=Xenop 0.028 15.4 21.1 30 5.7 0.3 8.3 6 tr|L7N3E8|L7N3E8_XENTR Uncharacterized protein OS=Xenop 0.069 14.2 1.0 0.29 12.1 1.0 2.1 2 sp|B1WAZ8|ZBT8A_XENTR Zinc finger and BTB domain-conta 0.51 11.4 2.9 17 6.5 0.6 3.6 3 tr|Q6DJ09|Q6DJ09_XENTR Snail family zinc finger 2 OS=Xe 0.52 11.3 32.1 46 5.1 0.1 9.8 4 tr|F7AL50|F7AL50_XENTR Uncharacterized protein (Fragmen 1.1 10.3 58.2 6.7 7.8 0.1 17.2 10 tr|F6RIV0|F6RIV0_XENTR Zinc finger protein 470 OS=Xenop 2.1 9.4 7.6 16 6.6 0.4 4.1 2 tr|K9J8F1|K9J8F1_XENTR Zinc finger protein 234 OS=Xenop 2.6 9.1 5.9 7.2 7.7 5.9 1.8 1 sp|Q28E95|SH3R1_XENTR E3 ubiquitin-protein ligase SH3R 3.5 8.7 10.6 37 5.4 0.2 3.6 2 tr|F7E188|F7E188_XENTR Tripartite motif-containing 9 OS 4.7 8.3 21.5 4.4 8.4 1.1 7.3 3 tr|F6ZVX9|F6ZVX9_XENTR Uncharacterized protein (Fragmen 9 7.4 40.2 1.8e+02 3.2 4.1 13.4 2 tr|F6Z8R2|F6Z8R2_XENTR Uncharacterized protein (Fragmen Domain annotation for each sequence (and alignments): >> tr|A4QNG4|A4QNG4_XENTR tRNA methyltransferase subunit 11-2 OS=Xenopus tropicalis OX=8364 GN=trmt112 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 48.9 0.0 6.4e-16 9.6e-13 1 68 [] 2 112 .. 2 112 .. 0.96 Alignments for each domain: == domain 1 score: 48.9 bits; conditional E-value: 6.4e-16 BTGGCCC-B-TTTHH.....C-..........................-HHHHHHHHH.TT---.S-SS----S...........CH CS Trm112p 1 kllllniLaCpackg.....pL..........................dwealvevaa.lglne.lpkekpedy...........el 43 kll++n+L ++ + g pL +w alve+a+ lg + lp+e+ + y ++ tr|A4QNG4|A4QNG4_XENTR 2 KLLTHNMLRSH-VSGvtrgfPLliraeevklsavdfnqdfvtrmipklEWGALVEAAEsLGHGSdLPRELETGYeknedflkkvhHV 87 789********.8888999*99999999999******************************************************** PP HTTEECCCCEEEETTTTEEEEEETT CS Trm112p 44 lleldieegeLvCpncgraYpIkdG 68 lle++++eg+L Cp+ g +pI G tr|A4QNG4|A4QNG4_XENTR 88 LLEVEVIEGALKCPESGTEFPITRG 112 **********************987 PP >> sp|Q5M8Z2|PREY_XENTR Protein preY, mitochondrial OS=Xenopus tropicalis OX=8364 GN=pyurf PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.3 0.0 3.5e-09 5.2e-06 1 68 [] 56 95 .. 56 95 .. 0.96 Alignments for each domain: == domain 1 score: 27.3 bits; conditional E-value: 3.5e-09 BTGGCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEEEEETT CS Trm112p 1 kllllniLaCpackgpLdwealvevaalglnelpkekpedyellleldieegeLvCpncgraYpIkdG 68 +++ll +L+Cp+ ++ L +++ ++eL++ + g+aYpI dG sp|Q5M8Z2|PREY_XENTR 56 DPTLLQFLVCPLSRKSL------------------------R----YEESTNELINDELGIAYPIVDG 95 689**************........................5....9********************9 PP >> tr|K9J7M0|K9J7M0_XENTR Uncharacterized protein (Fragment) OS=Xenopus tropicalis OX=8364 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.0 0.2 0.0037 5.6 48 67 .. 248 267 .. 188 267 .. 0.84 2 ? 5.0 0.0 0.034 51 47 67 .. 275 295 .. 269 296 .. 0.85 3 ? 3.9 0.0 0.073 1.1e+02 50 67 .. 306 323 .. 298 323 .. 0.82 4 ? -1.8 0.0 4.5 6.8e+03 47 60 .. 331 344 .] 326 344 .] 0.83 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.0037 ECCCCEEEETTTTEEEEEET CS Trm112p 48 dieegeLvCpncgraYpIkd 67 ++ e ++C +cgr + Ik+ tr|K9J7M0|K9J7M0_XENTR 248 HKGEKPFTCAECGRSFTIKN 267 6677889***********97 PP == domain 2 score: 5.0 bits; conditional E-value: 0.034 EECCCCEEEETTTTEEEEEET CS Trm112p 47 ldieegeLvCpncgraYpIkd 67 ++ e +vC++c ++ Ik+ tr|K9J7M0|K9J7M0_XENTR 275 MHSGEKPFVCSECAKTFSIKE 295 66778889***********98 PP == domain 3 score: 3.9 bits; conditional E-value: 0.073 CCCEEEETTTTEEEEEET CS Trm112p 50 eegeLvCpncgraYpIkd 67 e + C++cg ++p k+ tr|K9J7M0|K9J7M0_XENTR 306 GEKPFACTECGKCFPLKN 323 566788*********986 PP == domain 4 score: -1.8 bits; conditional E-value: 4.5 EECCCCEEEETTTT CS Trm112p 47 ldieegeLvCpncg 60 ++ e ++C++cg tr|K9J7M0|K9J7M0_XENTR 331 THTAEKPFTCTECG 344 78889999****97 PP >> tr|F7DL61|F7DL61_XENTR Uncharacterized protein (Fragment) OS=Xenopus tropicalis OX=8364 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.1 0.0 1.1 1.7e+03 52 63 .. 26 37 .. 5 40 .. 0.76 2 ? -1.4 0.0 3.2 4.9e+03 55 63 .. 56 64 .. 43 65 .. 0.89 3 ? 5.4 0.7 0.024 37 28 64 .. 104 152 .. 83 152 .. 0.64 4 ? 1.9 5.1 0.3 4.5e+02 46 63 .. 218 235 .. 158 239 .. 0.71 5 ? 2.0 0.1 0.29 4.4e+02 51 64 .. 250 263 .. 242 267 .. 0.87 6 ? 0.5 0.0 0.82 1.2e+03 50 65 .. 277 292 .. 264 295 .. 0.80 7 ! 10.3 0.0 0.00074 1.1 45 68 .] 356 379 .. 323 379 .. 0.80 8 ? 3.1 0.1 0.13 2e+02 45 67 .. 384 406 .. 381 407 .. 0.82 9 ? 1.2 0.1 0.5 7.6e+02 45 64 .. 412 431 .. 408 431 .. 0.84 10 ? 6.4 0.6 0.012 18 36 66 .. 463 489 .. 444 491 .. 0.77 11 ? 5.4 0.0 0.025 37 47 67 .. 498 518 .. 492 519 .. 0.82 12 ? 1.7 0.1 0.36 5.4e+02 45 64 .. 524 543 .] 521 543 .] 0.85 Alignments for each domain: == domain 1 score: 0.1 bits; conditional E-value: 1.1 CEEEETTTTEEE CS Trm112p 52 geLvCpncgraY 63 +vC +c+r + tr|F7DL61|F7DL61_XENTR 26 KPFVCAKCKRRF 37 5689******98 PP == domain 2 score: -1.4 bits; conditional E-value: 3.2 EETTTTEEE CS Trm112p 55 vCpncgraY 63 vCp+cg + tr|F7DL61|F7DL61_XENTR 56 VCPKCGKRF 64 8****9877 PP == domain 3 score: 5.4 bits; conditional E-value: 0.024 TT---S-SS----S............CHHTTEECCCCEEEETTTTEEEE CS Trm112p 28 lglnelpkekpedy............ellleldieegeLvCpncgraYp 64 ++++e p + + ++ le+ ee + C++cg Y+ tr|F7DL61|F7DL61_XENTR 104 VHQEEKPHVNNLCTqtecettdnrelDASLETRTEEKPFACNSCGKSYR 152 44444333222222446666689999899****************9996 PP == domain 4 score: 1.9 bits; conditional E-value: 0.3 TEECCCCEEEETTTTEEE CS Trm112p 46 eldieegeLvCpncgraY 63 +++ +++++Cp+cg Y tr|F7DL61|F7DL61_XENTR 218 KVHTHKNSFICPECGKSY 235 467777899999999888 PP == domain 5 score: 2.0 bits; conditional E-value: 0.29 CCEEEETTTTEEEE CS Trm112p 51 egeLvCpncgraYp 64 ++++C++cg +p tr|F7DL61|F7DL61_XENTR 250 GNTFQCTECGKSFP 263 5789*********9 PP == domain 6 score: 0.5 bits; conditional E-value: 0.82 CCCEEEETTTTEEEEE CS Trm112p 50 eegeLvCpncgraYpI 65 e + C++cg +p tr|F7DL61|F7DL61_XENTR 277 GEKPFECTDCGKLFPF 292 567789********95 PP == domain 7 score: 10.3 bits; conditional E-value: 0.00074 TTEECCCCEEEETTTTEEEEEETT CS Trm112p 45 leldieegeLvCpncgraYpIkdG 68 l ++ e +vC++cg a+++++G tr|F7DL61|F7DL61_XENTR 356 LLTHTGEKPFVCTECGKAFRVRQG 379 447888999*************98 PP == domain 8 score: 3.1 bits; conditional E-value: 0.13 TTEECCCCEEEETTTTEEEEEET CS Trm112p 45 leldieegeLvCpncgraYpIkd 67 l+ + e + C +cg a+++++ tr|F7DL61|F7DL61_XENTR 384 LQCHTGEKPFLCIECGEAFRVRQ 406 56677788889**********97 PP == domain 9 score: 1.2 bits; conditional E-value: 0.5 TTEECCCCEEEETTTTEEEE CS Trm112p 45 leldieegeLvCpncgraYp 64 l+++ e + Cp+cg +++ tr|F7DL61|F7DL61_XENTR 412 LQFHTGEKPFPCPECGACFR 431 78888899999*****9995 PP == domain 10 score: 6.4 bits; conditional E-value: 0.012 S----SCHHTTEECCCCEEEETTTTEEEEEE CS Trm112p 36 ekpedyellleldieegeLvCpncgraYpIk 66 e ++y+ +++ e +vC++cg +Y + tr|F7DL61|F7DL61_XENTR 463 ECDDHYY----THKGEKPFVCNECGKCYSMR 489 3334446....9****************765 PP == domain 11 score: 5.4 bits; conditional E-value: 0.025 EECCCCEEEETTTTEEEEEET CS Trm112p 47 ldieegeLvCpncgraYpIkd 67 ++ e +vC +cg Y+++ tr|F7DL61|F7DL61_XENTR 498 IHTGEAPFVCAECGKSYRVRR 518 66667789***********96 PP == domain 12 score: 1.7 bits; conditional E-value: 0.36 TTEECCCCEEEETTTTEEEE CS Trm112p 45 leldieegeLvCpncgraYp 64 l+++ e +vC +cg Y+ tr|F7DL61|F7DL61_XENTR 524 LRTHSGERPFVCAECGKSYR 543 5688889999******9996 PP >> tr|F6PYH5|F6PYH5_XENTR Zinc finger protein OS=Xenopus tropicalis OX=8364 GN=prdm5 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.0 0.4 2.5e-05 0.038 41 67 .. 161 213 .. 131 213 .. 0.73 2 ? 4.6 0.2 0.045 68 22 64 .. 361 415 .. 294 416 .. 0.70 3 ? -2.8 0.0 9 1.4e+04 48 63 .. 427 442 .. 422 443 .. 0.81 4 ? 2.5 0.3 0.2 3e+02 33 64 .. 543 584 .. 517 587 .. 0.60 Alignments for each domain: == domain 1 score: 15.0 bits; conditional E-value: 2.5e-05 S..........................CHHTTEECCCCEEEETTTTEEEEEET CS Trm112p 41 y..........................ellleldieegeLvCpncgraYpIkd 67 y ++l++ +ee e+ C+ncg +p+k+ tr|F6PYH5|F6PYH5_XENTR 161 YitykedhrcphcessfpsqeilaehlQALHQKPVEEKEFKCRNCGKKFPVKQ 213 3455555555566666666667777779999********************85 PP == domain 2 score: 4.6 bits; conditional E-value: 0.045 HHHHHH.TT---.S-SS----S............CHHTTEECCCCEEEETTTTEEEE CS Trm112p 22 lvevaa.lglne.lpkekpedy............ellleldieegeLvCpncgraYp 64 l +v+a + + + ++++++ + +++ ee ++C++c+ ++ tr|F6PYH5|F6PYH5_XENTR 361 LDQVTAhKIIHSeDKPYQCKLCgkgfahrnvyknH--KKTHSEERPFQCEECKALFR 415 34444444555557777777778888888888662..579************99885 PP == domain 3 score: -2.8 bits; conditional E-value: 9 ECCCCEEEETTTTEEE CS Trm112p 48 dieegeLvCpncgraY 63 + e ++ C +c+ ++ tr|F6PYH5|F6PYH5_XENTR 427 HNSERTFKCDHCDATF 442 67789999*9998877 PP == domain 4 score: 2.5 bits; conditional E-value: 0.2 S-SS----S..........CHHTTEECCCCEEEETTTTEEEE CS Trm112p 33 lpkekpedy..........ellleldieegeLvCpncgraYp 64 +++++++ ++ ++++ e ++C c++ + tr|F6PYH5|F6PYH5_XENTR 543 EKPYQCSECnkafsqkrglDEHMRTHTGEKPFQCDVCDLSFS 584 233333333677777778855689999999999999999986 PP >> tr|F6R0B0|F6R0B0_XENTR Zinc finger protein 474 OS=Xenopus tropicalis OX=8364 GN=znf474 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.1 0.0 0.26 3.9e+02 50 63 .. 113 126 .. 71 127 .. 0.78 2 ? 7.8 0.3 0.0044 6.6 48 63 .. 235 250 .. 137 251 .. 0.77 3 ? -1.4 0.0 3.2 4.8e+03 50 63 .. 380 394 .. 336 395 .. 0.58 Alignments for each domain: == domain 1 score: 2.1 bits; conditional E-value: 0.26 CCCEEEETTTTEEE CS Trm112p 50 eegeLvCpncgraY 63 + + L C ncgr++ tr|F6R0B0|F6R0B0_XENTR 113 QAQLLPCGNCGRTF 126 567899******99 PP == domain 2 score: 7.8 bits; conditional E-value: 0.0044 ECCCCEEEETTTTEEE CS Trm112p 48 dieegeLvCpncgraY 63 + +++ L Cpncgr + tr|F6R0B0|F6R0B0_XENTR 235 SFKDQLLKCPNCGRSF 250 567799********99 PP == domain 3 score: -1.4 bits; conditional E-value: 3.2 CCCEEE.ETTTTEEE CS Trm112p 50 eegeLv.CpncgraY 63 + +Lv C cgr++ tr|F6R0B0|F6R0B0_XENTR 380 AQSQLVaCDICGRTF 394 334443388888887 PP >> tr|L7N3E8|L7N3E8_XENTR Uncharacterized protein OS=Xenopus tropicalis OX=8364 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 0.2 0.02 30 45 67 .. 177 199 .. 108 200 .. 0.76 2 ? 2.8 0.0 0.16 2.5e+02 46 64 .. 206 224 .. 199 227 .. 0.84 3 ? 4.7 0.2 0.04 60 45 64 .. 261 280 .. 230 283 .. 0.76 4 ? 2.4 0.0 0.21 3.2e+02 48 68 .] 292 312 .. 285 312 .. 0.82 5 ? 5.7 0.3 0.02 30 48 67 .. 348 367 .. 317 368 .. 0.83 6 ? -0.2 1.2 1.3 2e+03 45 61 .. 401 417 .. 370 420 .. 0.56 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.02 TTEECCCCEEEETTTTEEEEEET CS Trm112p 45 leldieegeLvCpncgraYpIkd 67 + ++ e + C++cg ++p k+ tr|L7N3E8|L7N3E8_XENTR 177 MWMHSGEKPFACTECGKCFPLKN 199 4488899999**********986 PP == domain 2 score: 2.8 bits; conditional E-value: 0.16 TEECCCCEEEETTTTEEEE CS Trm112p 46 eldieegeLvCpncgraYp 64 +++ e ++C++cg+ + tr|L7N3E8|L7N3E8_XENTR 206 RTHTAEKPFTCTECGISFS 224 57889999********996 PP == domain 3 score: 4.7 bits; conditional E-value: 0.04 TTEECCCCEEEETTTTEEEE CS Trm112p 45 leldieegeLvCpncgraYp 64 ++++ e ++C++cgr + tr|L7N3E8|L7N3E8_XENTR 261 VRIHTGEKPFTCTECGRSFS 280 56788889999999999996 PP == domain 4 score: 2.4 bits; conditional E-value: 0.21 ECCCCEEEETTTTEEEEEETT CS Trm112p 48 dieegeLvCpncgraYpIkdG 68 + e ++C++cg + k+G tr|L7N3E8|L7N3E8_XENTR 292 HTGEKPFTCKECGKSFSLKKG 312 55677899********98877 PP == domain 5 score: 5.7 bits; conditional E-value: 0.02 ECCCCEEEETTTTEEEEEET CS Trm112p 48 dieegeLvCpncgraYpIkd 67 + e + C++cg + Ik+ tr|L7N3E8|L7N3E8_XENTR 348 HTGEKPFHCKECGKSFSIKN 367 55677899**********98 PP == domain 6 score: -0.2 bits; conditional E-value: 1.3 TTEECCCCEEEETTTTE CS Trm112p 45 leldieegeLvCpncgr 61 +++ e ++Cp c tr|L7N3E8|L7N3E8_XENTR 401 SKTHTGEKPFTCPQCAK 417 34566666666666655 PP >> sp|B1WAZ8|ZBT8A_XENTR Zinc finger and BTB domain-containing protein 8A OS=Xenopus tropicalis OX=8364 GN=zbtb8a PE=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.1 0.0 0.26 3.9e+02 41 61 .. 300 323 .. 238 325 .. 0.74 2 ? 12.1 1.0 0.00019 0.29 9 61 .. 317 379 .. 316 380 .. 0.80 Alignments for each domain: == domain 1 score: 2.1 bits; conditional E-value: 0.26 S...CHHTTEECCCCEEEETTTTE CS Trm112p 41 y...ellleldieegeLvCpncgr 61 + e +i +g + Cp c + sp|B1WAZ8|ZBT8A_XENTR 300 LggaSGWGEDEISSGRFKCPFCTH 323 3666333457999999****9987 PP == domain 2 score: 12.1 bits; conditional E-value: 0.00019 B-TTTHH......C--HHHHHHHHH.TT---.S-SS----S............CHHTTEECCCCEEEETTTTE CS Trm112p 9 aCpackg......pLdwealvevaa.lglne.lpkekpedy............ellleldieegeLvCpncgr 61 +Cp+c++ L ++ l+ + +++++e + +++ e g+L+C++c++ sp|B1WAZ8|ZBT8A_XENTR 317 KCPFCTHtvkrkaDL--------KRhLRCHTgERPYPCEACgkrftrlehlrnH--FQTIHEAGKLICRRCKL 379 79***9955555555........555677777888888888999*****99655..9999999********96 PP >> tr|Q6DJ09|Q6DJ09_XENTR Snail family zinc finger 2 OS=Xenopus tropicalis OX=8364 GN=snai2 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.1 0.0 0.27 4.1e+02 41 63 .. 94 135 .. 60 140 .. 0.70 2 ? 6.5 0.6 0.011 17 43 63 .. 200 220 .. 144 221 .. 0.78 3 ? -0.4 0.0 1.6 2.3e+03 45 63 .. 230 248 .. 222 249 .. 0.79 Alignments for each domain: == domain 1 score: 2.1 bits; conditional E-value: 0.27 S...................CHHTTEECCCCEEEETTTTEEE CS Trm112p 41 y...................ellleldieegeLvCpncgraY 63 +l+ + ie ++++C+ c +Y tr|Q6DJ09|Q6DJ09_XENTR 94 SkdhsgsespisdeeerlqtKLCDSHAIEAEKFQCSLCSKTY 135 244455555555555556665666678999999999999888 PP == domain 2 score: 6.5 bits; conditional E-value: 0.011 HHTTEECCCCEEEETTTTEEE CS Trm112p 43 llleldieegeLvCpncgraY 63 ++++ e + Cp+c+ra+ tr|Q6DJ09|Q6DJ09_XENTR 200 GHIRTHTGEKPFSCPHCNRAF 220 44889999999*********9 PP == domain 3 score: -0.4 bits; conditional E-value: 1.6 TTEECCCCEEEETTTTEEE CS Trm112p 45 leldieegeLvCpncgraY 63 l+++ + + +C+nc ++ tr|Q6DJ09|Q6DJ09_XENTR 230 LQTHSDVKKYQCKNCSKTF 248 77888888889****8877 PP >> tr|F7AL50|F7AL50_XENTR Uncharacterized protein (Fragment) OS=Xenopus tropicalis OX=8364 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.7 1.0 0.04 60 47 64 .. 34 51 .. 10 78 .. 0.76 2 ? -1.0 0.1 2.5 3.8e+03 48 63 .. 335 350 .. 309 351 .. 0.71 3 ? 5.1 0.1 0.03 46 10 64 .. 371 435 .. 362 435 .. 0.80 4 ? -0.3 0.0 1.5 2.3e+03 51 65 .. 450 464 .. 444 466 .. 0.83 Alignments for each domain: == domain 1 score: 4.7 bits; conditional E-value: 0.04 EECCCCEEEETTTTEEEE CS Trm112p 47 ldieegeLvCpncgraYp 64 ++ + ++Cp+cgr ++ tr|F7AL50|F7AL50_XENTR 34 MSNTMKPFICPKCGRRFY 51 444446679999999986 PP == domain 2 score: -1.0 bits; conditional E-value: 2.5 ECCCCEEEETTTTEEE CS Trm112p 48 dieegeLvCpncgraY 63 + e + C++cg + tr|F7AL50|F7AL50_XENTR 335 HTGEKPFECTECGKRF 350 4556667899998877 PP == domain 3 score: 5.1 bits; conditional E-value: 0.03 -TTTHHC--HHHHHHHHHTT---S-SS----S..........CHHTTEECCCCEEEETTTTEEEE CS Trm112p 10 CpackgpLdwealvevaalglnelpkekpedy..........ellleldieegeLvCpncgraYp 64 C c ++ +w+ ++ +lg + +++ +++ e+ ++ + e ++C++cg ++ tr|F7AL50|F7AL50_XENTR 371 CLECGQQFRWKQALQYHQLGHTGERPYECSECgkgfrssgelEVHVRSHTGEKPFICNECGKSFR 435 777777777888888888888887777777778999998888666778888999*******9985 PP == domain 4 score: -0.3 bits; conditional E-value: 1.5 CCEEEETTTTEEEEE CS Trm112p 51 egeLvCpncgraYpI 65 e +vC +cg Y + tr|F7AL50|F7AL50_XENTR 450 EKPFVCVECGKRYQV 464 66689******9987 PP >> tr|F6RIV0|F6RIV0_XENTR Zinc finger protein 470 OS=Xenopus tropicalis OX=8364 GN=znf470 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.4 0.0 1.6 2.5e+03 48 66 .. 5 23 .. 2 24 .. 0.78 2 ? 1.0 0.2 0.6 9e+02 49 64 .. 62 77 .. 32 80 .. 0.80 3 ? 3.0 0.5 0.14 2e+02 45 63 .. 116 132 .. 83 133 .. 0.75 4 ? 3.3 0.8 0.11 1.7e+02 46 68 .] 227 249 .. 163 249 .. 0.83 5 ? -0.4 0.2 1.6 2.4e+03 46 63 .. 339 356 .. 291 358 .. 0.66 6 ? -2.2 0.0 5.7 8.7e+03 55 66 .. 376 387 .. 363 389 .. 0.84 7 ? 3.3 3.8 0.11 1.7e+02 48 66 .. 509 527 .. 395 557 .. 0.71 8 ? 7.8 0.1 0.0044 6.7 41 66 .. 581 611 .. 555 613 .. 0.73 9 ? 3.3 0.0 0.11 1.7e+02 44 64 .. 617 637 .. 611 641 .. 0.87 10 ? 1.5 0.0 0.4 6.1e+02 46 68 .] 650 672 .. 637 672 .. 0.79 Alignments for each domain: == domain 1 score: -0.4 bits; conditional E-value: 1.6 ECCCCEEEETTTTEEEEEE CS Trm112p 48 dieegeLvCpncgraYpIk 66 + e + C++cg ++ k tr|F6RIV0|F6RIV0_XENTR 5 HTGEKPFMCTECGKSFRLK 23 55677789*******9876 PP == domain 2 score: 1.0 bits; conditional E-value: 0.6 CCCCEEEETTTTEEEE CS Trm112p 49 ieegeLvCpncgraYp 64 e + C++cgr ++ tr|F6RIV0|F6RIV0_XENTR 62 TGEKPFMCTECGRSFR 77 5567788999999996 PP == domain 3 score: 3.0 bits; conditional E-value: 0.14 TTEECCCCEEEETTTTEEE CS Trm112p 45 leldieegeLvCpncgraY 63 + ++i + Cp+cgr Y tr|F6RIV0|F6RIV0_XENTR 116 IHTVI--KHFKCPECGRRY 132 44444..5689******99 PP == domain 4 score: 3.3 bits; conditional E-value: 0.11 TEECCCCEEEETTTTEEEEEETT CS Trm112p 46 eldieegeLvCpncgraYpIkdG 68 +++ e ++C++cg ++ +k G tr|F6RIV0|F6RIV0_XENTR 227 RVHTGEKPFTCTECGKCFSVKSG 249 467778889*********99976 PP == domain 5 score: -0.4 bits; conditional E-value: 1.6 TEECCCCEEEETTTTEEE CS Trm112p 46 eldieegeLvCpncgraY 63 +++ e ++C++cg + tr|F6RIV0|F6RIV0_XENTR 339 RVHTGEKPFTCTECGKSF 356 466677788899998777 PP == domain 6 score: -2.2 bits; conditional E-value: 5.7 EETTTTEEEEEE CS Trm112p 55 vCpncgraYpIk 66 +C++cg + ++ tr|F6RIV0|F6RIV0_XENTR 376 TCTECGKSFTVN 387 7*****999875 PP == domain 7 score: 3.3 bits; conditional E-value: 0.11 ECCCCEEEETTTTEEEEEE CS Trm112p 48 dieegeLvCpncgraYpIk 66 + e + C++cg +++k tr|F6RIV0|F6RIV0_XENTR 509 HTGEKPFDCSECGKSFRVK 527 3333333333333333333 PP == domain 8 score: 7.8 bits; conditional E-value: 0.0044 S.....CHHTTEECCCCEEEETTTTEEEEEE CS Trm112p 41 y.....ellleldieegeLvCpncgraYpIk 66 + +l l+++ e +vC++cg ++++ tr|F6RIV0|F6RIV0_XENTR 581 RvkrqlTLHLQTHTGEKPFVCTECGKSFRVQ 611 04445566799999999999***99999986 PP == domain 9 score: 3.3 bits; conditional E-value: 0.11 HTTEECCCCEEEETTTTEEEE CS Trm112p 44 lleldieegeLvCpncgraYp 64 l+++ e +vC++cg ++ tr|F6RIV0|F6RIV0_XENTR 617 HLQTHTGEKPFVCTECGKSFR 637 4899999**********9996 PP == domain 10 score: 1.5 bits; conditional E-value: 0.4 TEECCCCEEEETTTTEEEEEETT CS Trm112p 46 eldieegeLvCpncgraYpIkdG 68 +++ e +C++cg ++ k+G tr|F6RIV0|F6RIV0_XENTR 650 KIHTGEKPYTCTECGKSFRLKEG 672 5566666668*********9998 PP >> tr|K9J8F1|K9J8F1_XENTR Zinc finger protein 234 OS=Xenopus tropicalis OX=8364 GN=znf234 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.6 1.7 0.19 2.9e+02 47 63 .. 449 465 .. 353 468 .. 0.65 2 ? 6.6 0.4 0.01 16 41 63 .. 489 521 .. 466 522 .. 0.72 Alignments for each domain: == domain 1 score: 2.6 bits; conditional E-value: 0.19 EECCCCEEEETTTTEEE CS Trm112p 47 ldieegeLvCpncgraY 63 ++ e + Cp+cgr + tr|K9J8F1|K9J8F1_XENTR 449 VHTGEKPFSCPDCGRSF 465 34556677888888877 PP == domain 2 score: 6.6 bits; conditional E-value: 0.01 S..........CHHTTEECCCCEEEETTTTEEE CS Trm112p 41 y..........ellleldieegeLvCpncgraY 63 l l++++ee ++C++cg+ + tr|K9J8F1|K9J8F1_XENTR 489 CgrcfsclellRLHLKTHREEKRFTCSDCGIGF 521 1566666666656699*************9855 PP >> sp|Q28E95|SH3R1_XENTR E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus tropicalis OX=8364 GN=sh3rf1 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 5.9 0.0047 7.2 3 60 .. 5 53 .. 3 55 .. 0.76 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.0047 GGCCC-B-TTTHHC--HHHHHHHHHTT---.S-SS----S...CHHTTEECCCCEEEETTTT CS Trm112p 3 lllniLaCpackgpLdwealvevaalglne.lpkekpedy...ellleldieegeLvCpncg 60 ll++L Cp+c +L ++ lp + ll ++ ++eL Cp+c+ sp|Q28E95|SH3R1_XENTR 5 ALLDLLECPVCLERL----------DASAKvLPCQH---TfckRCLLGIVSSRNELRCPECR 53 69*************..........12223344444...255599****************8 PP >> tr|F7E188|F7E188_XENTR Tripartite motif-containing 9 OS=Xenopus tropicalis OX=8364 GN=trim9 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 0.2 0.024 37 48 64 .. 2 18 .. 1 18 [. 0.88 2 ? 2.2 5.7 0.25 3.8e+02 8 42 .. 129 199 .. 126 250 .. 0.64 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.024 ECCCCEEEETTTTEEEE CS Trm112p 48 dieegeLvCpncgraYp 64 +++e+eL Cp cg Y+ tr|F7E188|F7E188_XENTR 2 EEMEEELKCPVCGSFYR 18 689**********9885 PP == domain 2 score: 2.2 bits; conditional E-value: 0.25 -B-TTTHHC-..............-HHHHHHHHH.TT---S-SS----S.....................C CS Trm112p 8 LaCpackgpL..............dwealvevaa.lglnelpkekpedy.....................e 42 L+Cp+c+ L +e ++e+ + + + l+ +++e+ tr|F7E188|F7E188_XENTR 129 LTCPQCHRSLilderglrgfaknrVLEGVIERYQqSKAAALRCQLCEKSpkeatvmceqcdvfycepcrlR 199 99******888888888888888878888888888888888888888888666644444444444444440 PP >> tr|F6ZVX9|F6ZVX9_XENTR Uncharacterized protein (Fragment) OS=Xenopus tropicalis OX=8364 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.6 0.0 0.77 1.2e+03 51 63 .. 247 259 .. 240 260 .. 0.82 2 ? -1.8 0.0 4.3 6.5e+03 53 63 .. 277 287 .. 267 290 .. 0.81 3 ? 8.4 1.1 0.0029 4.4 41 66 .. 311 346 .. 279 348 .. 0.68 Alignments for each domain: == domain 1 score: 0.6 bits; conditional E-value: 0.77 CCEEEETTTTEEE CS Trm112p 51 egeLvCpncgraY 63 e ++C++cg + tr|F6ZVX9|F6ZVX9_XENTR 247 EKPFICKECGKSF 259 6778******987 PP == domain 2 score: -1.8 bits; conditional E-value: 4.3 EEEETTTTEEE CS Trm112p 53 eLvCpncgraY 63 + C++cg ++ tr|F6ZVX9|F6ZVX9_XENTR 277 PFSCSECGKTF 287 578****9988 PP == domain 3 score: 8.4 bits; conditional E-value: 0.0029 S..........CHHTTEECCCCEEEETTTTEEEEEE CS Trm112p 41 y..........ellleldieegeLvCpncgraYpIk 66 ++ +l+ e + C++cg ++pIk tr|F6ZVX9|F6ZVX9_XENTR 311 CgkrfsqkgtlHTHQKLHTGELPFSCTECGECFPIK 346 2455555555555566777778889**********8 PP >> tr|F6Z8R2|F6Z8R2_XENTR Uncharacterized protein (Fragment) OS=Xenopus tropicalis OX=8364 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.8 0.1 0.66 1e+03 42 63 .. 11 32 .. 2 33 .. 0.80 2 ? 3.2 4.1 0.12 1.8e+02 41 65 .. 677 708 .. 520 709 .. 0.87 Alignments for each domain: == domain 1 score: 0.8 bits; conditional E-value: 0.66 CHHTTEECCCCEEEETTTTEEE CS Trm112p 42 ellleldieegeLvCpncgraY 63 +l l+++ e + C++cg + tr|F6Z8R2|F6Z8R2_XENTR 11 HLHLKIHTGEKPFHCTECGKEF 32 788999999*********9876 PP == domain 2 score: 3.2 bits; conditional E-value: 0.12 S.......CHHTTEECCCCEEEETTTTEEEEE CS Trm112p 41 y.......ellleldieegeLvCpncgraYpI 65 + l+++ e + C++cg +pI tr|F6Z8R2|F6Z8R2_XENTR 677 KfsrrsnlHRHLQIHTGEKPFSCTECGKKFPI 708 04444556666899999999999999999999 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (68 nodes) Target sequences: 24182 (11782085 residues searched) Passed MSV filter: 1196 (0.0494583); expected 483.6 (0.02) Passed bias filter: 858 (0.0354809); expected 483.6 (0.02) Passed Vit filter: 120 (0.00496237); expected 24.2 (0.001) Passed Fwd filter: 53 (0.00219171); expected 0.2 (1e-05) Initial search space (Z): 24182 [actual number of targets] Domain search space (domZ): 16 [number of targets reported over threshold] # CPU time: 0.48u 0.01s 00:00:00.49 Elapsed: 00:00:00.14 # Mc/sec: 5722.73 // [ok]