# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Trm112p.hmm.txt
# target sequence database: proteomes/Xenopus_tropicalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Trm112p [M=68]
Accession: PF03966.15
Description: Trm112p-like protein
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.1e-13 49.4 0.0 9.6e-13 48.9 0.0 1.2 1 tr|A4QNG4|A4QNG4_XENTR tRNA methyltransferase subunit 1
1.6e-06 29.0 0.0 5.2e-06 27.3 0.0 1.9 1 sp|Q5M8Z2|PREY_XENTR Protein preY, mitochondrial OS=X
0.0017 19.3 3.9 5.6 8.0 0.2 4.4 4 tr|K9J7M0|K9J7M0_XENTR Uncharacterized protein (Fragmen
0.0042 18.0 51.9 1.1 10.3 0.0 12.9 12 tr|F7DL61|F7DL61_XENTR Uncharacterized protein (Fragmen
0.0097 16.9 12.2 0.038 15.0 0.4 4.6 4 tr|F6PYH5|F6PYH5_XENTR Zinc finger protein OS=Xenopus t
------ inclusion threshold ------
0.025 15.6 0.7 6.6 7.8 0.3 3.9 3 tr|F6R0B0|F6R0B0_XENTR Zinc finger protein 474 OS=Xenop
0.028 15.4 21.1 30 5.7 0.3 8.3 6 tr|L7N3E8|L7N3E8_XENTR Uncharacterized protein OS=Xenop
0.069 14.2 1.0 0.29 12.1 1.0 2.1 2 sp|B1WAZ8|ZBT8A_XENTR Zinc finger and BTB domain-conta
0.51 11.4 2.9 17 6.5 0.6 3.6 3 tr|Q6DJ09|Q6DJ09_XENTR Snail family zinc finger 2 OS=Xe
0.52 11.3 32.1 46 5.1 0.1 9.8 4 tr|F7AL50|F7AL50_XENTR Uncharacterized protein (Fragmen
1.1 10.3 58.2 6.7 7.8 0.1 17.2 10 tr|F6RIV0|F6RIV0_XENTR Zinc finger protein 470 OS=Xenop
2.1 9.4 7.6 16 6.6 0.4 4.1 2 tr|K9J8F1|K9J8F1_XENTR Zinc finger protein 234 OS=Xenop
2.6 9.1 5.9 7.2 7.7 5.9 1.8 1 sp|Q28E95|SH3R1_XENTR E3 ubiquitin-protein ligase SH3R
3.5 8.7 10.6 37 5.4 0.2 3.6 2 tr|F7E188|F7E188_XENTR Tripartite motif-containing 9 OS
4.7 8.3 21.5 4.4 8.4 1.1 7.3 3 tr|F6ZVX9|F6ZVX9_XENTR Uncharacterized protein (Fragmen
9 7.4 40.2 1.8e+02 3.2 4.1 13.4 2 tr|F6Z8R2|F6Z8R2_XENTR Uncharacterized protein (Fragmen
Domain annotation for each sequence (and alignments):
>> tr|A4QNG4|A4QNG4_XENTR tRNA methyltransferase subunit 11-2 OS=Xenopus tropicalis OX=8364 GN=trmt112 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 48.9 0.0 6.4e-16 9.6e-13 1 68 [] 2 112 .. 2 112 .. 0.96
Alignments for each domain:
== domain 1 score: 48.9 bits; conditional E-value: 6.4e-16
BTGGCCC-B-TTTHH.....C-..........................-HHHHHHHHH.TT---.S-SS----S...........CH CS
Trm112p 1 kllllniLaCpackg.....pL..........................dwealvevaa.lglne.lpkekpedy...........el 43
kll++n+L ++ + g pL +w alve+a+ lg + lp+e+ + y ++
tr|A4QNG4|A4QNG4_XENTR 2 KLLTHNMLRSH-VSGvtrgfPLliraeevklsavdfnqdfvtrmipklEWGALVEAAEsLGHGSdLPRELETGYeknedflkkvhHV 87
789********.8888999*99999999999******************************************************** PP
HTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 44 lleldieegeLvCpncgraYpIkdG 68
lle++++eg+L Cp+ g +pI G
tr|A4QNG4|A4QNG4_XENTR 88 LLEVEVIEGALKCPESGTEFPITRG 112
**********************987 PP
>> sp|Q5M8Z2|PREY_XENTR Protein preY, mitochondrial OS=Xenopus tropicalis OX=8364 GN=pyurf PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.3 0.0 3.5e-09 5.2e-06 1 68 [] 56 95 .. 56 95 .. 0.96
Alignments for each domain:
== domain 1 score: 27.3 bits; conditional E-value: 3.5e-09
BTGGCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEEEEETT CS
Trm112p 1 kllllniLaCpackgpLdwealvevaalglnelpkekpedyellleldieegeLvCpncgraYpIkdG 68
+++ll +L+Cp+ ++ L +++ ++eL++ + g+aYpI dG
sp|Q5M8Z2|PREY_XENTR 56 DPTLLQFLVCPLSRKSL------------------------R----YEESTNELINDELGIAYPIVDG 95
689**************........................5....9********************9 PP
>> tr|K9J7M0|K9J7M0_XENTR Uncharacterized protein (Fragment) OS=Xenopus tropicalis OX=8364 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.0 0.2 0.0037 5.6 48 67 .. 248 267 .. 188 267 .. 0.84
2 ? 5.0 0.0 0.034 51 47 67 .. 275 295 .. 269 296 .. 0.85
3 ? 3.9 0.0 0.073 1.1e+02 50 67 .. 306 323 .. 298 323 .. 0.82
4 ? -1.8 0.0 4.5 6.8e+03 47 60 .. 331 344 .] 326 344 .] 0.83
Alignments for each domain:
== domain 1 score: 8.0 bits; conditional E-value: 0.0037
ECCCCEEEETTTTEEEEEET CS
Trm112p 48 dieegeLvCpncgraYpIkd 67
++ e ++C +cgr + Ik+
tr|K9J7M0|K9J7M0_XENTR 248 HKGEKPFTCAECGRSFTIKN 267
6677889***********97 PP
== domain 2 score: 5.0 bits; conditional E-value: 0.034
EECCCCEEEETTTTEEEEEET CS
Trm112p 47 ldieegeLvCpncgraYpIkd 67
++ e +vC++c ++ Ik+
tr|K9J7M0|K9J7M0_XENTR 275 MHSGEKPFVCSECAKTFSIKE 295
66778889***********98 PP
== domain 3 score: 3.9 bits; conditional E-value: 0.073
CCCEEEETTTTEEEEEET CS
Trm112p 50 eegeLvCpncgraYpIkd 67
e + C++cg ++p k+
tr|K9J7M0|K9J7M0_XENTR 306 GEKPFACTECGKCFPLKN 323
566788*********986 PP
== domain 4 score: -1.8 bits; conditional E-value: 4.5
EECCCCEEEETTTT CS
Trm112p 47 ldieegeLvCpncg 60
++ e ++C++cg
tr|K9J7M0|K9J7M0_XENTR 331 THTAEKPFTCTECG 344
78889999****97 PP
>> tr|F7DL61|F7DL61_XENTR Uncharacterized protein (Fragment) OS=Xenopus tropicalis OX=8364 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.1 0.0 1.1 1.7e+03 52 63 .. 26 37 .. 5 40 .. 0.76
2 ? -1.4 0.0 3.2 4.9e+03 55 63 .. 56 64 .. 43 65 .. 0.89
3 ? 5.4 0.7 0.024 37 28 64 .. 104 152 .. 83 152 .. 0.64
4 ? 1.9 5.1 0.3 4.5e+02 46 63 .. 218 235 .. 158 239 .. 0.71
5 ? 2.0 0.1 0.29 4.4e+02 51 64 .. 250 263 .. 242 267 .. 0.87
6 ? 0.5 0.0 0.82 1.2e+03 50 65 .. 277 292 .. 264 295 .. 0.80
7 ! 10.3 0.0 0.00074 1.1 45 68 .] 356 379 .. 323 379 .. 0.80
8 ? 3.1 0.1 0.13 2e+02 45 67 .. 384 406 .. 381 407 .. 0.82
9 ? 1.2 0.1 0.5 7.6e+02 45 64 .. 412 431 .. 408 431 .. 0.84
10 ? 6.4 0.6 0.012 18 36 66 .. 463 489 .. 444 491 .. 0.77
11 ? 5.4 0.0 0.025 37 47 67 .. 498 518 .. 492 519 .. 0.82
12 ? 1.7 0.1 0.36 5.4e+02 45 64 .. 524 543 .] 521 543 .] 0.85
Alignments for each domain:
== domain 1 score: 0.1 bits; conditional E-value: 1.1
CEEEETTTTEEE CS
Trm112p 52 geLvCpncgraY 63
+vC +c+r +
tr|F7DL61|F7DL61_XENTR 26 KPFVCAKCKRRF 37
5689******98 PP
== domain 2 score: -1.4 bits; conditional E-value: 3.2
EETTTTEEE CS
Trm112p 55 vCpncgraY 63
vCp+cg +
tr|F7DL61|F7DL61_XENTR 56 VCPKCGKRF 64
8****9877 PP
== domain 3 score: 5.4 bits; conditional E-value: 0.024
TT---S-SS----S............CHHTTEECCCCEEEETTTTEEEE CS
Trm112p 28 lglnelpkekpedy............ellleldieegeLvCpncgraYp 64
++++e p + + ++ le+ ee + C++cg Y+
tr|F7DL61|F7DL61_XENTR 104 VHQEEKPHVNNLCTqtecettdnrelDASLETRTEEKPFACNSCGKSYR 152
44444333222222446666689999899****************9996 PP
== domain 4 score: 1.9 bits; conditional E-value: 0.3
TEECCCCEEEETTTTEEE CS
Trm112p 46 eldieegeLvCpncgraY 63
+++ +++++Cp+cg Y
tr|F7DL61|F7DL61_XENTR 218 KVHTHKNSFICPECGKSY 235
467777899999999888 PP
== domain 5 score: 2.0 bits; conditional E-value: 0.29
CCEEEETTTTEEEE CS
Trm112p 51 egeLvCpncgraYp 64
++++C++cg +p
tr|F7DL61|F7DL61_XENTR 250 GNTFQCTECGKSFP 263
5789*********9 PP
== domain 6 score: 0.5 bits; conditional E-value: 0.82
CCCEEEETTTTEEEEE CS
Trm112p 50 eegeLvCpncgraYpI 65
e + C++cg +p
tr|F7DL61|F7DL61_XENTR 277 GEKPFECTDCGKLFPF 292
567789********95 PP
== domain 7 score: 10.3 bits; conditional E-value: 0.00074
TTEECCCCEEEETTTTEEEEEETT CS
Trm112p 45 leldieegeLvCpncgraYpIkdG 68
l ++ e +vC++cg a+++++G
tr|F7DL61|F7DL61_XENTR 356 LLTHTGEKPFVCTECGKAFRVRQG 379
447888999*************98 PP
== domain 8 score: 3.1 bits; conditional E-value: 0.13
TTEECCCCEEEETTTTEEEEEET CS
Trm112p 45 leldieegeLvCpncgraYpIkd 67
l+ + e + C +cg a+++++
tr|F7DL61|F7DL61_XENTR 384 LQCHTGEKPFLCIECGEAFRVRQ 406
56677788889**********97 PP
== domain 9 score: 1.2 bits; conditional E-value: 0.5
TTEECCCCEEEETTTTEEEE CS
Trm112p 45 leldieegeLvCpncgraYp 64
l+++ e + Cp+cg +++
tr|F7DL61|F7DL61_XENTR 412 LQFHTGEKPFPCPECGACFR 431
78888899999*****9995 PP
== domain 10 score: 6.4 bits; conditional E-value: 0.012
S----SCHHTTEECCCCEEEETTTTEEEEEE CS
Trm112p 36 ekpedyellleldieegeLvCpncgraYpIk 66
e ++y+ +++ e +vC++cg +Y +
tr|F7DL61|F7DL61_XENTR 463 ECDDHYY----THKGEKPFVCNECGKCYSMR 489
3334446....9****************765 PP
== domain 11 score: 5.4 bits; conditional E-value: 0.025
EECCCCEEEETTTTEEEEEET CS
Trm112p 47 ldieegeLvCpncgraYpIkd 67
++ e +vC +cg Y+++
tr|F7DL61|F7DL61_XENTR 498 IHTGEAPFVCAECGKSYRVRR 518
66667789***********96 PP
== domain 12 score: 1.7 bits; conditional E-value: 0.36
TTEECCCCEEEETTTTEEEE CS
Trm112p 45 leldieegeLvCpncgraYp 64
l+++ e +vC +cg Y+
tr|F7DL61|F7DL61_XENTR 524 LRTHSGERPFVCAECGKSYR 543
5688889999******9996 PP
>> tr|F6PYH5|F6PYH5_XENTR Zinc finger protein OS=Xenopus tropicalis OX=8364 GN=prdm5 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.0 0.4 2.5e-05 0.038 41 67 .. 161 213 .. 131 213 .. 0.73
2 ? 4.6 0.2 0.045 68 22 64 .. 361 415 .. 294 416 .. 0.70
3 ? -2.8 0.0 9 1.4e+04 48 63 .. 427 442 .. 422 443 .. 0.81
4 ? 2.5 0.3 0.2 3e+02 33 64 .. 543 584 .. 517 587 .. 0.60
Alignments for each domain:
== domain 1 score: 15.0 bits; conditional E-value: 2.5e-05
S..........................CHHTTEECCCCEEEETTTTEEEEEET CS
Trm112p 41 y..........................ellleldieegeLvCpncgraYpIkd 67
y ++l++ +ee e+ C+ncg +p+k+
tr|F6PYH5|F6PYH5_XENTR 161 YitykedhrcphcessfpsqeilaehlQALHQKPVEEKEFKCRNCGKKFPVKQ 213
3455555555566666666667777779999********************85 PP
== domain 2 score: 4.6 bits; conditional E-value: 0.045
HHHHHH.TT---.S-SS----S............CHHTTEECCCCEEEETTTTEEEE CS
Trm112p 22 lvevaa.lglne.lpkekpedy............ellleldieegeLvCpncgraYp 64
l +v+a + + + ++++++ + +++ ee ++C++c+ ++
tr|F6PYH5|F6PYH5_XENTR 361 LDQVTAhKIIHSeDKPYQCKLCgkgfahrnvyknH--KKTHSEERPFQCEECKALFR 415
34444444555557777777778888888888662..579************99885 PP
== domain 3 score: -2.8 bits; conditional E-value: 9
ECCCCEEEETTTTEEE CS
Trm112p 48 dieegeLvCpncgraY 63
+ e ++ C +c+ ++
tr|F6PYH5|F6PYH5_XENTR 427 HNSERTFKCDHCDATF 442
67789999*9998877 PP
== domain 4 score: 2.5 bits; conditional E-value: 0.2
S-SS----S..........CHHTTEECCCCEEEETTTTEEEE CS
Trm112p 33 lpkekpedy..........ellleldieegeLvCpncgraYp 64
+++++++ ++ ++++ e ++C c++ +
tr|F6PYH5|F6PYH5_XENTR 543 EKPYQCSECnkafsqkrglDEHMRTHTGEKPFQCDVCDLSFS 584
233333333677777778855689999999999999999986 PP
>> tr|F6R0B0|F6R0B0_XENTR Zinc finger protein 474 OS=Xenopus tropicalis OX=8364 GN=znf474 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.1 0.0 0.26 3.9e+02 50 63 .. 113 126 .. 71 127 .. 0.78
2 ? 7.8 0.3 0.0044 6.6 48 63 .. 235 250 .. 137 251 .. 0.77
3 ? -1.4 0.0 3.2 4.8e+03 50 63 .. 380 394 .. 336 395 .. 0.58
Alignments for each domain:
== domain 1 score: 2.1 bits; conditional E-value: 0.26
CCCEEEETTTTEEE CS
Trm112p 50 eegeLvCpncgraY 63
+ + L C ncgr++
tr|F6R0B0|F6R0B0_XENTR 113 QAQLLPCGNCGRTF 126
567899******99 PP
== domain 2 score: 7.8 bits; conditional E-value: 0.0044
ECCCCEEEETTTTEEE CS
Trm112p 48 dieegeLvCpncgraY 63
+ +++ L Cpncgr +
tr|F6R0B0|F6R0B0_XENTR 235 SFKDQLLKCPNCGRSF 250
567799********99 PP
== domain 3 score: -1.4 bits; conditional E-value: 3.2
CCCEEE.ETTTTEEE CS
Trm112p 50 eegeLv.CpncgraY 63
+ +Lv C cgr++
tr|F6R0B0|F6R0B0_XENTR 380 AQSQLVaCDICGRTF 394
334443388888887 PP
>> tr|L7N3E8|L7N3E8_XENTR Uncharacterized protein OS=Xenopus tropicalis OX=8364 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.7 0.2 0.02 30 45 67 .. 177 199 .. 108 200 .. 0.76
2 ? 2.8 0.0 0.16 2.5e+02 46 64 .. 206 224 .. 199 227 .. 0.84
3 ? 4.7 0.2 0.04 60 45 64 .. 261 280 .. 230 283 .. 0.76
4 ? 2.4 0.0 0.21 3.2e+02 48 68 .] 292 312 .. 285 312 .. 0.82
5 ? 5.7 0.3 0.02 30 48 67 .. 348 367 .. 317 368 .. 0.83
6 ? -0.2 1.2 1.3 2e+03 45 61 .. 401 417 .. 370 420 .. 0.56
Alignments for each domain:
== domain 1 score: 5.7 bits; conditional E-value: 0.02
TTEECCCCEEEETTTTEEEEEET CS
Trm112p 45 leldieegeLvCpncgraYpIkd 67
+ ++ e + C++cg ++p k+
tr|L7N3E8|L7N3E8_XENTR 177 MWMHSGEKPFACTECGKCFPLKN 199
4488899999**********986 PP
== domain 2 score: 2.8 bits; conditional E-value: 0.16
TEECCCCEEEETTTTEEEE CS
Trm112p 46 eldieegeLvCpncgraYp 64
+++ e ++C++cg+ +
tr|L7N3E8|L7N3E8_XENTR 206 RTHTAEKPFTCTECGISFS 224
57889999********996 PP
== domain 3 score: 4.7 bits; conditional E-value: 0.04
TTEECCCCEEEETTTTEEEE CS
Trm112p 45 leldieegeLvCpncgraYp 64
++++ e ++C++cgr +
tr|L7N3E8|L7N3E8_XENTR 261 VRIHTGEKPFTCTECGRSFS 280
56788889999999999996 PP
== domain 4 score: 2.4 bits; conditional E-value: 0.21
ECCCCEEEETTTTEEEEEETT CS
Trm112p 48 dieegeLvCpncgraYpIkdG 68
+ e ++C++cg + k+G
tr|L7N3E8|L7N3E8_XENTR 292 HTGEKPFTCKECGKSFSLKKG 312
55677899********98877 PP
== domain 5 score: 5.7 bits; conditional E-value: 0.02
ECCCCEEEETTTTEEEEEET CS
Trm112p 48 dieegeLvCpncgraYpIkd 67
+ e + C++cg + Ik+
tr|L7N3E8|L7N3E8_XENTR 348 HTGEKPFHCKECGKSFSIKN 367
55677899**********98 PP
== domain 6 score: -0.2 bits; conditional E-value: 1.3
TTEECCCCEEEETTTTE CS
Trm112p 45 leldieegeLvCpncgr 61
+++ e ++Cp c
tr|L7N3E8|L7N3E8_XENTR 401 SKTHTGEKPFTCPQCAK 417
34566666666666655 PP
>> sp|B1WAZ8|ZBT8A_XENTR Zinc finger and BTB domain-containing protein 8A OS=Xenopus tropicalis OX=8364 GN=zbtb8a PE=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.1 0.0 0.26 3.9e+02 41 61 .. 300 323 .. 238 325 .. 0.74
2 ? 12.1 1.0 0.00019 0.29 9 61 .. 317 379 .. 316 380 .. 0.80
Alignments for each domain:
== domain 1 score: 2.1 bits; conditional E-value: 0.26
S...CHHTTEECCCCEEEETTTTE CS
Trm112p 41 y...ellleldieegeLvCpncgr 61
+ e +i +g + Cp c +
sp|B1WAZ8|ZBT8A_XENTR 300 LggaSGWGEDEISSGRFKCPFCTH 323
3666333457999999****9987 PP
== domain 2 score: 12.1 bits; conditional E-value: 0.00019
B-TTTHH......C--HHHHHHHHH.TT---.S-SS----S............CHHTTEECCCCEEEETTTTE CS
Trm112p 9 aCpackg......pLdwealvevaa.lglne.lpkekpedy............ellleldieegeLvCpncgr 61
+Cp+c++ L ++ l+ + +++++e + +++ e g+L+C++c++
sp|B1WAZ8|ZBT8A_XENTR 317 KCPFCTHtvkrkaDL--------KRhLRCHTgERPYPCEACgkrftrlehlrnH--FQTIHEAGKLICRRCKL 379
79***9955555555........555677777888888888999*****99655..9999999********96 PP
>> tr|Q6DJ09|Q6DJ09_XENTR Snail family zinc finger 2 OS=Xenopus tropicalis OX=8364 GN=snai2 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.1 0.0 0.27 4.1e+02 41 63 .. 94 135 .. 60 140 .. 0.70
2 ? 6.5 0.6 0.011 17 43 63 .. 200 220 .. 144 221 .. 0.78
3 ? -0.4 0.0 1.6 2.3e+03 45 63 .. 230 248 .. 222 249 .. 0.79
Alignments for each domain:
== domain 1 score: 2.1 bits; conditional E-value: 0.27
S...................CHHTTEECCCCEEEETTTTEEE CS
Trm112p 41 y...................ellleldieegeLvCpncgraY 63
+l+ + ie ++++C+ c +Y
tr|Q6DJ09|Q6DJ09_XENTR 94 SkdhsgsespisdeeerlqtKLCDSHAIEAEKFQCSLCSKTY 135
244455555555555556665666678999999999999888 PP
== domain 2 score: 6.5 bits; conditional E-value: 0.011
HHTTEECCCCEEEETTTTEEE CS
Trm112p 43 llleldieegeLvCpncgraY 63
++++ e + Cp+c+ra+
tr|Q6DJ09|Q6DJ09_XENTR 200 GHIRTHTGEKPFSCPHCNRAF 220
44889999999*********9 PP
== domain 3 score: -0.4 bits; conditional E-value: 1.6
TTEECCCCEEEETTTTEEE CS
Trm112p 45 leldieegeLvCpncgraY 63
l+++ + + +C+nc ++
tr|Q6DJ09|Q6DJ09_XENTR 230 LQTHSDVKKYQCKNCSKTF 248
77888888889****8877 PP
>> tr|F7AL50|F7AL50_XENTR Uncharacterized protein (Fragment) OS=Xenopus tropicalis OX=8364 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.7 1.0 0.04 60 47 64 .. 34 51 .. 10 78 .. 0.76
2 ? -1.0 0.1 2.5 3.8e+03 48 63 .. 335 350 .. 309 351 .. 0.71
3 ? 5.1 0.1 0.03 46 10 64 .. 371 435 .. 362 435 .. 0.80
4 ? -0.3 0.0 1.5 2.3e+03 51 65 .. 450 464 .. 444 466 .. 0.83
Alignments for each domain:
== domain 1 score: 4.7 bits; conditional E-value: 0.04
EECCCCEEEETTTTEEEE CS
Trm112p 47 ldieegeLvCpncgraYp 64
++ + ++Cp+cgr ++
tr|F7AL50|F7AL50_XENTR 34 MSNTMKPFICPKCGRRFY 51
444446679999999986 PP
== domain 2 score: -1.0 bits; conditional E-value: 2.5
ECCCCEEEETTTTEEE CS
Trm112p 48 dieegeLvCpncgraY 63
+ e + C++cg +
tr|F7AL50|F7AL50_XENTR 335 HTGEKPFECTECGKRF 350
4556667899998877 PP
== domain 3 score: 5.1 bits; conditional E-value: 0.03
-TTTHHC--HHHHHHHHHTT---S-SS----S..........CHHTTEECCCCEEEETTTTEEEE CS
Trm112p 10 CpackgpLdwealvevaalglnelpkekpedy..........ellleldieegeLvCpncgraYp 64
C c ++ +w+ ++ +lg + +++ +++ e+ ++ + e ++C++cg ++
tr|F7AL50|F7AL50_XENTR 371 CLECGQQFRWKQALQYHQLGHTGERPYECSECgkgfrssgelEVHVRSHTGEKPFICNECGKSFR 435
777777777888888888888887777777778999998888666778888999*******9985 PP
== domain 4 score: -0.3 bits; conditional E-value: 1.5
CCEEEETTTTEEEEE CS
Trm112p 51 egeLvCpncgraYpI 65
e +vC +cg Y +
tr|F7AL50|F7AL50_XENTR 450 EKPFVCVECGKRYQV 464
66689******9987 PP
>> tr|F6RIV0|F6RIV0_XENTR Zinc finger protein 470 OS=Xenopus tropicalis OX=8364 GN=znf470 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.4 0.0 1.6 2.5e+03 48 66 .. 5 23 .. 2 24 .. 0.78
2 ? 1.0 0.2 0.6 9e+02 49 64 .. 62 77 .. 32 80 .. 0.80
3 ? 3.0 0.5 0.14 2e+02 45 63 .. 116 132 .. 83 133 .. 0.75
4 ? 3.3 0.8 0.11 1.7e+02 46 68 .] 227 249 .. 163 249 .. 0.83
5 ? -0.4 0.2 1.6 2.4e+03 46 63 .. 339 356 .. 291 358 .. 0.66
6 ? -2.2 0.0 5.7 8.7e+03 55 66 .. 376 387 .. 363 389 .. 0.84
7 ? 3.3 3.8 0.11 1.7e+02 48 66 .. 509 527 .. 395 557 .. 0.71
8 ? 7.8 0.1 0.0044 6.7 41 66 .. 581 611 .. 555 613 .. 0.73
9 ? 3.3 0.0 0.11 1.7e+02 44 64 .. 617 637 .. 611 641 .. 0.87
10 ? 1.5 0.0 0.4 6.1e+02 46 68 .] 650 672 .. 637 672 .. 0.79
Alignments for each domain:
== domain 1 score: -0.4 bits; conditional E-value: 1.6
ECCCCEEEETTTTEEEEEE CS
Trm112p 48 dieegeLvCpncgraYpIk 66
+ e + C++cg ++ k
tr|F6RIV0|F6RIV0_XENTR 5 HTGEKPFMCTECGKSFRLK 23
55677789*******9876 PP
== domain 2 score: 1.0 bits; conditional E-value: 0.6
CCCCEEEETTTTEEEE CS
Trm112p 49 ieegeLvCpncgraYp 64
e + C++cgr ++
tr|F6RIV0|F6RIV0_XENTR 62 TGEKPFMCTECGRSFR 77
5567788999999996 PP
== domain 3 score: 3.0 bits; conditional E-value: 0.14
TTEECCCCEEEETTTTEEE CS
Trm112p 45 leldieegeLvCpncgraY 63
+ ++i + Cp+cgr Y
tr|F6RIV0|F6RIV0_XENTR 116 IHTVI--KHFKCPECGRRY 132
44444..5689******99 PP
== domain 4 score: 3.3 bits; conditional E-value: 0.11
TEECCCCEEEETTTTEEEEEETT CS
Trm112p 46 eldieegeLvCpncgraYpIkdG 68
+++ e ++C++cg ++ +k G
tr|F6RIV0|F6RIV0_XENTR 227 RVHTGEKPFTCTECGKCFSVKSG 249
467778889*********99976 PP
== domain 5 score: -0.4 bits; conditional E-value: 1.6
TEECCCCEEEETTTTEEE CS
Trm112p 46 eldieegeLvCpncgraY 63
+++ e ++C++cg +
tr|F6RIV0|F6RIV0_XENTR 339 RVHTGEKPFTCTECGKSF 356
466677788899998777 PP
== domain 6 score: -2.2 bits; conditional E-value: 5.7
EETTTTEEEEEE CS
Trm112p 55 vCpncgraYpIk 66
+C++cg + ++
tr|F6RIV0|F6RIV0_XENTR 376 TCTECGKSFTVN 387
7*****999875 PP
== domain 7 score: 3.3 bits; conditional E-value: 0.11
ECCCCEEEETTTTEEEEEE CS
Trm112p 48 dieegeLvCpncgraYpIk 66
+ e + C++cg +++k
tr|F6RIV0|F6RIV0_XENTR 509 HTGEKPFDCSECGKSFRVK 527
3333333333333333333 PP
== domain 8 score: 7.8 bits; conditional E-value: 0.0044
S.....CHHTTEECCCCEEEETTTTEEEEEE CS
Trm112p 41 y.....ellleldieegeLvCpncgraYpIk 66
+ +l l+++ e +vC++cg ++++
tr|F6RIV0|F6RIV0_XENTR 581 RvkrqlTLHLQTHTGEKPFVCTECGKSFRVQ 611
04445566799999999999***99999986 PP
== domain 9 score: 3.3 bits; conditional E-value: 0.11
HTTEECCCCEEEETTTTEEEE CS
Trm112p 44 lleldieegeLvCpncgraYp 64
l+++ e +vC++cg ++
tr|F6RIV0|F6RIV0_XENTR 617 HLQTHTGEKPFVCTECGKSFR 637
4899999**********9996 PP
== domain 10 score: 1.5 bits; conditional E-value: 0.4
TEECCCCEEEETTTTEEEEEETT CS
Trm112p 46 eldieegeLvCpncgraYpIkdG 68
+++ e +C++cg ++ k+G
tr|F6RIV0|F6RIV0_XENTR 650 KIHTGEKPYTCTECGKSFRLKEG 672
5566666668*********9998 PP
>> tr|K9J8F1|K9J8F1_XENTR Zinc finger protein 234 OS=Xenopus tropicalis OX=8364 GN=znf234 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.6 1.7 0.19 2.9e+02 47 63 .. 449 465 .. 353 468 .. 0.65
2 ? 6.6 0.4 0.01 16 41 63 .. 489 521 .. 466 522 .. 0.72
Alignments for each domain:
== domain 1 score: 2.6 bits; conditional E-value: 0.19
EECCCCEEEETTTTEEE CS
Trm112p 47 ldieegeLvCpncgraY 63
++ e + Cp+cgr +
tr|K9J8F1|K9J8F1_XENTR 449 VHTGEKPFSCPDCGRSF 465
34556677888888877 PP
== domain 2 score: 6.6 bits; conditional E-value: 0.01
S..........CHHTTEECCCCEEEETTTTEEE CS
Trm112p 41 y..........ellleldieegeLvCpncgraY 63
l l++++ee ++C++cg+ +
tr|K9J8F1|K9J8F1_XENTR 489 CgrcfsclellRLHLKTHREEKRFTCSDCGIGF 521
1566666666656699*************9855 PP
>> sp|Q28E95|SH3R1_XENTR E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus tropicalis OX=8364 GN=sh3rf1 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 7.7 5.9 0.0047 7.2 3 60 .. 5 53 .. 3 55 .. 0.76
Alignments for each domain:
== domain 1 score: 7.7 bits; conditional E-value: 0.0047
GGCCC-B-TTTHHC--HHHHHHHHHTT---.S-SS----S...CHHTTEECCCCEEEETTTT CS
Trm112p 3 lllniLaCpackgpLdwealvevaalglne.lpkekpedy...ellleldieegeLvCpncg 60
ll++L Cp+c +L ++ lp + ll ++ ++eL Cp+c+
sp|Q28E95|SH3R1_XENTR 5 ALLDLLECPVCLERL----------DASAKvLPCQH---TfckRCLLGIVSSRNELRCPECR 53
69*************..........12223344444...255599****************8 PP
>> tr|F7E188|F7E188_XENTR Tripartite motif-containing 9 OS=Xenopus tropicalis OX=8364 GN=trim9 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.4 0.2 0.024 37 48 64 .. 2 18 .. 1 18 [. 0.88
2 ? 2.2 5.7 0.25 3.8e+02 8 42 .. 129 199 .. 126 250 .. 0.64
Alignments for each domain:
== domain 1 score: 5.4 bits; conditional E-value: 0.024
ECCCCEEEETTTTEEEE CS
Trm112p 48 dieegeLvCpncgraYp 64
+++e+eL Cp cg Y+
tr|F7E188|F7E188_XENTR 2 EEMEEELKCPVCGSFYR 18
689**********9885 PP
== domain 2 score: 2.2 bits; conditional E-value: 0.25
-B-TTTHHC-..............-HHHHHHHHH.TT---S-SS----S.....................C CS
Trm112p 8 LaCpackgpL..............dwealvevaa.lglnelpkekpedy.....................e 42
L+Cp+c+ L +e ++e+ + + + l+ +++e+
tr|F7E188|F7E188_XENTR 129 LTCPQCHRSLilderglrgfaknrVLEGVIERYQqSKAAALRCQLCEKSpkeatvmceqcdvfycepcrlR 199
99******888888888888888878888888888888888888888888666644444444444444440 PP
>> tr|F6ZVX9|F6ZVX9_XENTR Uncharacterized protein (Fragment) OS=Xenopus tropicalis OX=8364 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.6 0.0 0.77 1.2e+03 51 63 .. 247 259 .. 240 260 .. 0.82
2 ? -1.8 0.0 4.3 6.5e+03 53 63 .. 277 287 .. 267 290 .. 0.81
3 ? 8.4 1.1 0.0029 4.4 41 66 .. 311 346 .. 279 348 .. 0.68
Alignments for each domain:
== domain 1 score: 0.6 bits; conditional E-value: 0.77
CCEEEETTTTEEE CS
Trm112p 51 egeLvCpncgraY 63
e ++C++cg +
tr|F6ZVX9|F6ZVX9_XENTR 247 EKPFICKECGKSF 259
6778******987 PP
== domain 2 score: -1.8 bits; conditional E-value: 4.3
EEEETTTTEEE CS
Trm112p 53 eLvCpncgraY 63
+ C++cg ++
tr|F6ZVX9|F6ZVX9_XENTR 277 PFSCSECGKTF 287
578****9988 PP
== domain 3 score: 8.4 bits; conditional E-value: 0.0029
S..........CHHTTEECCCCEEEETTTTEEEEEE CS
Trm112p 41 y..........ellleldieegeLvCpncgraYpIk 66
++ +l+ e + C++cg ++pIk
tr|F6ZVX9|F6ZVX9_XENTR 311 CgkrfsqkgtlHTHQKLHTGELPFSCTECGECFPIK 346
2455555555555566777778889**********8 PP
>> tr|F6Z8R2|F6Z8R2_XENTR Uncharacterized protein (Fragment) OS=Xenopus tropicalis OX=8364 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.8 0.1 0.66 1e+03 42 63 .. 11 32 .. 2 33 .. 0.80
2 ? 3.2 4.1 0.12 1.8e+02 41 65 .. 677 708 .. 520 709 .. 0.87
Alignments for each domain:
== domain 1 score: 0.8 bits; conditional E-value: 0.66
CHHTTEECCCCEEEETTTTEEE CS
Trm112p 42 ellleldieegeLvCpncgraY 63
+l l+++ e + C++cg +
tr|F6Z8R2|F6Z8R2_XENTR 11 HLHLKIHTGEKPFHCTECGKEF 32
788999999*********9876 PP
== domain 2 score: 3.2 bits; conditional E-value: 0.12
S.......CHHTTEECCCCEEEETTTTEEEEE CS
Trm112p 41 y.......ellleldieegeLvCpncgraYpI 65
+ l+++ e + C++cg +pI
tr|F6Z8R2|F6Z8R2_XENTR 677 KfsrrsnlHRHLQIHTGEKPFSCTECGKKFPI 708
04444556666899999999999999999999 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (68 nodes)
Target sequences: 24182 (11782085 residues searched)
Passed MSV filter: 1196 (0.0494583); expected 483.6 (0.02)
Passed bias filter: 858 (0.0354809); expected 483.6 (0.02)
Passed Vit filter: 120 (0.00496237); expected 24.2 (0.001)
Passed Fwd filter: 53 (0.00219171); expected 0.2 (1e-05)
Initial search space (Z): 24182 [actual number of targets]
Domain search space (domZ): 16 [number of targets reported over threshold]
# CPU time: 0.48u 0.01s 00:00:00.49 Elapsed: 00:00:00.14
# Mc/sec: 5722.73
//
[ok]