# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/TrmO.hmm.txt # target sequence database: proteomes/Branchiostoma_floridae.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TrmO [M=119] Accession: PF01980.16 Description: tRNA-methyltransferase O Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.5e-45 153.3 0.0 8.6e-45 152.4 0.0 1.5 1 tr|C3Y1S2|C3Y1S2_BRAFL Uncharacterized protein (Fragment) OS Domain annotation for each sequence (and alignments): >> tr|C3Y1S2|C3Y1S2_BRAFL Uncharacterized protein (Fragment) OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_219336 PE= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 152.4 0.0 3e-49 8.6e-45 1 119 [] 24 143 .. 24 143 .. 0.96 Alignments for each domain: == domain 1 score: 152.4 bits; conditional E-value: 3e-49 TS-SSGGG--.-EEEEEE-HHH....HGGGTTGGG-SEEEEEEE-TTS...-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEE CS TrmO 1 giPrqpglaeeaeaeielepey..nseealegleefshlwllfvfhenaekklkakvrpprlggnervGvfatRsphRpnpiglsvv 85 g+Prqp++++ ++a++++++++ n+e++l+g+e+fsh+w+lfvfh n +++kakv+pprl+g +vGvfatRsphRpnpigl+++ tr|C3Y1S2|C3Y1S2_BRAFL 24 GTPRQPTVCDLSKAKLTISRNVfnNPEHSLDGIEKFSHIWILFVFHMNGGEAVKAKVKPPRLDG-VKVGVFATRSPHRPNPIGLTLA 109 79****************9887557899******************9999999**********9.899******************* PP EEEEEETTEEEEES----TT-EEEEEEE--HHHH CS TrmO 86 klekvegnvlevsgvDlldgtpvlDiKPYvpyaD 119 kl+kveg++l++sg+D++dgtp+lDiKPY+p +D tr|C3Y1S2|C3Y1S2_BRAFL 110 KLDKVEGDTLHLSGIDIIDGTPILDIKPYIPVYD 143 *******************************998 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (119 nodes) Target sequences: 28542 (13248087 residues searched) Passed MSV filter: 375 (0.0131385); expected 570.8 (0.02) Passed bias filter: 337 (0.0118072); expected 570.8 (0.02) Passed Vit filter: 24 (0.000840866); expected 28.5 (0.001) Passed Fwd filter: 1 (3.50361e-05); expected 0.3 (1e-05) Initial search space (Z): 28542 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.13u 0.01s 00:00:00.14 Elapsed: 00:00:00.07 # Mc/sec: 22521.75 // [ok]