# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/TrmO.hmm.txt
# target sequence database:        proteomes/Ciona_intestinalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       TrmO  [M=119]
Accession:   PF01980.16
Description: tRNA-methyltransferase O
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    1.6e-08   34.7   1.9    3.3e-08   33.7   0.4    2.2  3  tr|F6U8L4|F6U8L4_CIOIN  Uncharacterized protein OS=Ciona inte


Domain annotation for each sequence (and alignments):
>> tr|F6U8L4|F6U8L4_CIOIN  Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.4     2e-12   3.3e-08      94     119 .]       1      26 [.       1      26 [. 0.95
   2 ?   -1.1   0.0      0.11   1.9e+03      92     112 ..      53      73 ..      39      80 .. 0.70
   3 ?   -1.4   0.0      0.14   2.4e+03      21      35 ..      75      88 ..      57     121 .. 0.61

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 2e-12
                             EEEEES----TT-EEEEEEE--HHHH CS
                    TrmO  94 vlevsgvDlldgtpvlDiKPYvpyaD 119
                             +l++sg+D++dgtpvlDiKPY+p++D
  tr|F6U8L4|F6U8L4_CIOIN   1 TLNFSGLDIVDGTPVLDIKPYIPSYD 26 
                             5899********************99 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.11
                             TTEEEEES----TT-EEEEEE CS
                    TrmO  92 gnvlevsgvDlldgtpvlDiK 112
                             +  l ++ +  + + pv  iK
  tr|F6U8L4|F6U8L4_CIOIN  53 NIDLDIQTAQWITEPPVAEIK 73 
                             456778888888888888888 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.14
                            HH..HGGGTTGGG-S CS
                    TrmO 21 eynseealegleefs 35
                            ++ +++al+++++f+
  tr|F6U8L4|F6U8L4_CIOIN 75 QF-TNRALTDISHFK 88
                            34.445555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (119 nodes)
Target sequences:                        16678  (5370518 residues searched)
Passed MSV filter:                       240  (0.0143902); expected 333.6 (0.02)
Passed bias filter:                      203  (0.0121717); expected 333.6 (0.02)
Passed Vit filter:                        15  (0.000899388); expected 16.7 (0.001)
Passed Fwd filter:                         1  (5.99592e-05); expected 0.2 (1e-05)
Initial search space (Z):              16678  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.06u 0.00s 00:00:00.06 Elapsed: 00:00:00.03
# Mc/sec: 21303.05
//
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