# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/TrmO.hmm.txt
# target sequence database:        proteomes/Danio_rerio.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       TrmO  [M=119]
Accession:   PF01980.16
Description: tRNA-methyltransferase O
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    2.3e-42  144.4   0.0      4e-42  143.7   0.0    1.4  1  tr|R4GEK9|R4GEK9_DANRE  tRNA methyltransferase O OS=Danio rer


Domain annotation for each sequence (and alignments):
>> tr|R4GEK9|R4GEK9_DANRE  tRNA methyltransferase O OS=Danio rerio OX=7955 GN=trmo PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.7   0.0   1.5e-46     4e-42       1     119 []     101     220 ..     101     220 .. 0.97

  Alignments for each domain:
  == domain 1  score: 143.7 bits;  conditional E-value: 1.5e-46
                             TS-SSGGG--.-EEEEEE-HHH....HGGGTTGGG-SEEEEEEE-TTS...-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEE CS
                    TrmO   1 giPrqpglaeeaeaeielepey..nseealegleefshlwllfvfhenaekklkakvrpprlggnervGvfatRsphRpnpiglsvv 85 
                             g+Prqp+++++++a++++ep++  n+e++l gle++sh+w++f fh+n + ++kakv+pprl+g e+vGv++tRsphRpn++gl+++
  tr|R4GEK9|R4GEK9_DANRE 101 GTPRQPTVCSSSRARLKIEPSVfnNPEHSLVGLEQYSHIWIIFLFHKNGQMSCKAKVKPPRLNG-EKVGVYSTRSPHRPNALGLTLA 186
                             79*****************998667899********************99999**********9.899******************* PP

                             EEEEEETTEEEEES----TT-EEEEEEE--HHHH CS
                    TrmO  86 klekvegnvlevsgvDlldgtpvlDiKPYvpyaD 119
                             kle ++g++l++sgvD++ gtpvlDiKPY+p++D
  tr|R4GEK9|R4GEK9_DANRE 187 KLEGITGDTLHLSGVDVIAGTPVLDIKPYIPDYD 220
                             ********************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (119 nodes)
Target sequences:                        25687  (13798380 residues searched)
Passed MSV filter:                       360  (0.0140149); expected 513.7 (0.02)
Passed bias filter:                      337  (0.0131195); expected 513.7 (0.02)
Passed Vit filter:                        15  (0.000583953); expected 25.7 (0.001)
Passed Fwd filter:                         1  (3.89302e-05); expected 0.3 (1e-05)
Initial search space (Z):              25687  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.01s 00:00:00.14 Elapsed: 00:00:00.08
# Mc/sec: 20525.09
//
[ok]