# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/TrmO.hmm.txt
# target sequence database:        proteomes/Monodelphis_domestica.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       TrmO  [M=119]
Accession:   PF01980.16
Description: tRNA-methyltransferase O
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    9.9e-42  142.2   0.0    1.8e-41  141.3   0.0    1.4  1  tr|F6TYQ5|F6TYQ5_MONDO  tRNA methyltransferase O OS=Monodelph
  ------ inclusion threshold ------
      0.042   14.3   0.0      0.048   14.1   0.0    1.1  1  tr|K7E4Y6|K7E4Y6_MONDO  Uncharacterized protein OS=Monodelphi


Domain annotation for each sequence (and alignments):
>> tr|F6TYQ5|F6TYQ5_MONDO  tRNA methyltransferase O OS=Monodelphis domestica OX=13616 GN=TRMO PE=4 SV=2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.3   0.0   1.7e-45   1.8e-41       1     119 []      45     164 ..      45     164 .. 0.96

  Alignments for each domain:
  == domain 1  score: 141.3 bits;  conditional E-value: 1.7e-45
                             TS-SSGGG--.-EEEEEE-HHH....HGGGTTGGG-SEEEEEEE-TTS...-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEE CS
                    TrmO   1 giPrqpglaeeaeaeielepey..nseealegleefshlwllfvfhenaekklkakvrpprlggnervGvfatRsphRpnpiglsvv 85 
                             g+Prqp++++ ++a +++++++  n+e+++ gle+fsh+w+lfvfh+n + ++kakv+pprl+g +++G+f+tRsphRpn+igl+++
  tr|F6TYQ5|F6TYQ5_MONDO  45 GTPRQPTICSLSRACLRIRKSVfnNPEHSVMGLEQFSHVWILFVFHKNGHLSCKAKVQPPRLNG-TKTGIFSTRSPHRPNAIGLTLA 130
                             79****************9887557889********************99999**********9.666******************* PP

                             EEEEEETTEEEEES----TT-EEEEEEE--HHHH CS
                    TrmO  86 klekvegnvlevsgvDlldgtpvlDiKPYvpyaD 119
                             kl++veg ++++sg+D+++gtpvlDiKPY++++D
  tr|F6TYQ5|F6TYQ5_MONDO 131 KLDRVEGGTIYLSGIDMINGTPVLDIKPYIADYD 164
                             *******************************998 PP

>> tr|K7E4Y6|K7E4Y6_MONDO  Uncharacterized protein OS=Monodelphis domestica OX=13616 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.5e-06     0.048       2      91 ..       3      90 ..       2     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.5e-06
                            S-SSGGG--.-EEEEEE-HHH..HGGGTTGGG-SEEEEEEE-TTS...-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEEEEEEE CS
                    TrmO  2 iPrqpglaeeaeaeielepeynseealegleefshlwllfvfhenaekklkakvrpprlggnervGvfatRsphRpnpiglsvvklekv 90
                            iPr   l+++    ++ ++ ++s++al+ l++  h+  lfv  +   +  +a   +p  +g+e    +a+R p R n + l +v+  + 
  tr|K7E4Y6|K7E4Y6_MONDO  3 IPRACDLMTQGILALVTSTGCASANALQSLTDAMHIPHLFVQRNPGGSPRTACHLNPSPEGEEY--TLASRPPVRLNDVMLKLVTELRW 89
                            7999999999999999999999**************9999998775555455666888888777..9***************9986665 PP

                            E CS
                    TrmO 91 e 91
                            +
  tr|K7E4Y6|K7E4Y6_MONDO 90 Q 90
                            5 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (119 nodes)
Target sequences:                        21272  (11266248 residues searched)
Passed MSV filter:                       289  (0.0135859); expected 425.4 (0.02)
Passed bias filter:                      265  (0.0124577); expected 425.4 (0.02)
Passed Vit filter:                        14  (0.000658142); expected 21.3 (0.001)
Passed Fwd filter:                         2  (9.40203e-05); expected 0.2 (1e-05)
Initial search space (Z):              21272  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.01s 00:00:00.12 Elapsed: 00:00:00.07
# Mc/sec: 19152.62
//
[ok]