# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TrmO.hmm.txt
# target sequence database: proteomes/Monodelphis_domestica.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TrmO [M=119]
Accession: PF01980.16
Description: tRNA-methyltransferase O
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.9e-42 142.2 0.0 1.8e-41 141.3 0.0 1.4 1 tr|F6TYQ5|F6TYQ5_MONDO tRNA methyltransferase O OS=Monodelph
------ inclusion threshold ------
0.042 14.3 0.0 0.048 14.1 0.0 1.1 1 tr|K7E4Y6|K7E4Y6_MONDO Uncharacterized protein OS=Monodelphi
Domain annotation for each sequence (and alignments):
>> tr|F6TYQ5|F6TYQ5_MONDO tRNA methyltransferase O OS=Monodelphis domestica OX=13616 GN=TRMO PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 141.3 0.0 1.7e-45 1.8e-41 1 119 [] 45 164 .. 45 164 .. 0.96
Alignments for each domain:
== domain 1 score: 141.3 bits; conditional E-value: 1.7e-45
TS-SSGGG--.-EEEEEE-HHH....HGGGTTGGG-SEEEEEEE-TTS...-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEE CS
TrmO 1 giPrqpglaeeaeaeielepey..nseealegleefshlwllfvfhenaekklkakvrpprlggnervGvfatRsphRpnpiglsvv 85
g+Prqp++++ ++a +++++++ n+e+++ gle+fsh+w+lfvfh+n + ++kakv+pprl+g +++G+f+tRsphRpn+igl+++
tr|F6TYQ5|F6TYQ5_MONDO 45 GTPRQPTICSLSRACLRIRKSVfnNPEHSVMGLEQFSHVWILFVFHKNGHLSCKAKVQPPRLNG-TKTGIFSTRSPHRPNAIGLTLA 130
79****************9887557889********************99999**********9.666******************* PP
EEEEEETTEEEEES----TT-EEEEEEE--HHHH CS
TrmO 86 klekvegnvlevsgvDlldgtpvlDiKPYvpyaD 119
kl++veg ++++sg+D+++gtpvlDiKPY++++D
tr|F6TYQ5|F6TYQ5_MONDO 131 KLDRVEGGTIYLSGIDMINGTPVLDIKPYIADYD 164
*******************************998 PP
>> tr|K7E4Y6|K7E4Y6_MONDO Uncharacterized protein OS=Monodelphis domestica OX=13616 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 14.1 0.0 4.5e-06 0.048 2 91 .. 3 90 .. 2 100 .. 0.83
Alignments for each domain:
== domain 1 score: 14.1 bits; conditional E-value: 4.5e-06
S-SSGGG--.-EEEEEE-HHH..HGGGTTGGG-SEEEEEEE-TTS...-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEEEEEEE CS
TrmO 2 iPrqpglaeeaeaeielepeynseealegleefshlwllfvfhenaekklkakvrpprlggnervGvfatRsphRpnpiglsvvklekv 90
iPr l+++ ++ ++ ++s++al+ l++ h+ lfv + + +a +p +g+e +a+R p R n + l +v+ +
tr|K7E4Y6|K7E4Y6_MONDO 3 IPRACDLMTQGILALVTSTGCASANALQSLTDAMHIPHLFVQRNPGGSPRTACHLNPSPEGEEY--TLASRPPVRLNDVMLKLVTELRW 89
7999999999999999999999**************9999998775555455666888888777..9***************9986665 PP
E CS
TrmO 91 e 91
+
tr|K7E4Y6|K7E4Y6_MONDO 90 Q 90
5 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (119 nodes)
Target sequences: 21272 (11266248 residues searched)
Passed MSV filter: 289 (0.0135859); expected 425.4 (0.02)
Passed bias filter: 265 (0.0124577); expected 425.4 (0.02)
Passed Vit filter: 14 (0.000658142); expected 21.3 (0.001)
Passed Fwd filter: 2 (9.40203e-05); expected 0.2 (1e-05)
Initial search space (Z): 21272 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.11u 0.01s 00:00:00.12 Elapsed: 00:00:00.07
# Mc/sec: 19152.62
//
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