# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TrmO.hmm.txt
# target sequence database: proteomes/Monosiga_brevicollis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TrmO [M=119]
Accession: PF01980.16
Description: tRNA-methyltransferase O
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.6e-42 141.0 0.0 3e-41 139.4 0.0 1.9 2 tr|A9V4U4|A9V4U4_MONBE Predicted protein OS=Monosiga brevico
6.2e-08 31.9 0.0 1e-07 31.2 0.0 1.5 1 tr|A9V8A2|A9V8A2_MONBE Predicted protein OS=Monosiga brevico
Domain annotation for each sequence (and alignments):
>> tr|A9V4U4|A9V4U4_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=33342 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.3 0.0 1.2 5.4e+03 31 86 .. 541 596 .. 529 603 .. 0.56
2 ! 139.4 0.0 6.5e-45 3e-41 1 119 [] 967 1084 .. 967 1084 .. 0.98
Alignments for each domain:
== domain 1 score: -3.3 bits; conditional E-value: 1.2
GGG-SEEEEEEE-TTS......-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEEE CS
TrmO 31 leefshlwllfvfhen...aekklkakvrpprlggnervGvfatRsphRpnpiglsvvk 86
l +f+ lw vf+++ +++++ a+ +p +++ +at i +svv+
tr|A9V4U4|A9V4U4_MONBE 541 LANFDALWADSVFDSRedlQAATTGATSLKPLTNE---APAMATNRADSAQVIIVSVVR 596
78889999999998662332222233333444333...244666666666666666665 PP
== domain 2 score: 139.4 bits; conditional E-value: 6.5e-45
TS-SSGGG--.-EEEEEE-HHH..HGGGTTGGG-SEEEEEEE-TTS...-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEE CS
TrmO 1 giPrqpglaeeaeaeielepeynseealegleefshlwllfvfhenaekklkakvrpprlggnervGvfatRsphRpnpiglsvv 85
g+Prqp+l++ ++a+++l+ +++ alegl+++sh+w++f fh n++ ++k+k+rpp+ gg rvGv+atRsphRpnpigls++
tr|A9V4U4|A9V4U4_MONBE 967 GTPRQPNLCPMSRAKLRLRCFNDNHPALEGLHHYSHVWIIFLFHLNDNVAVKPKIRPPKAGG-LRVGVMATRSPHRPNPIGLSLC 1050
79*****************9999*********************9989999*********99.999******************* PP
EEEEEETTEEEEES----TT-EEEEEEE--HHHH CS
TrmO 86 klekvegnvlevsgvDlldgtpvlDiKPYvpyaD 119
k++++eg+++ ++g+Dl+dgtpvlD+KPY+p++D
tr|A9V4U4|A9V4U4_MONBE 1051 KVHRIEGDTIILAGIDLVDGTPVLDVKPYLPFFD 1084
*******************************999 PP
>> tr|A9V8A2|A9V8A2_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=11127 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 31.2 0.0 2.2e-11 1e-07 92 118 .. 37 63 .. 6 64 .. 0.85
Alignments for each domain:
== domain 1 score: 31.2 bits; conditional E-value: 2.2e-11
TTEEEEES----TT-EEEEEEE--HHH CS
TrmO 92 gnvlevsgvDlldgtpvlDiKPYvpya 118
+ ++g Dl+dgtpvlDiKPY+p++
tr|A9V8A2|A9V8A2_MONBE 37 AAGIAIAGHDLVDGTPVLDIKPYLPHV 63
46699*******************986 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (119 nodes)
Target sequences: 9188 (5511963 residues searched)
Passed MSV filter: 135 (0.0146931); expected 183.8 (0.02)
Passed bias filter: 129 (0.0140401); expected 183.8 (0.02)
Passed Vit filter: 13 (0.00141489); expected 9.2 (0.001)
Passed Fwd filter: 2 (0.000217675); expected 0.1 (1e-05)
Initial search space (Z): 9188 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.06u 0.00s 00:00:00.06 Elapsed: 00:00:00.04
# Mc/sec: 16398.09
//
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