# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/TrmO.hmm.txt
# target sequence database:        proteomes/Mus_musculus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       TrmO  [M=119]
Accession:   PF01980.16
Description: tRNA-methyltransferase O
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence             Description
    ------- ------ -----    ------- ------ -----   ---- --  --------             -----------
      2e-43  147.7   0.0    3.2e-43  147.0   0.0    1.3  1  sp|Q562D6|TRMO_MOUSE  tRNA (adenine(37)-N6)-methyltransferase


Domain annotation for each sequence (and alignments):
>> sp|Q562D6|TRMO_MOUSE  tRNA (adenine(37)-N6)-methyltransferase OS=Mus musculus OX=10090 GN=Trmo PE=2 SV=2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.0   0.0   1.4e-47   3.2e-43       1     119 []      45     164 ..      45     164 .. 0.96

  Alignments for each domain:
  == domain 1  score: 147.0 bits;  conditional E-value: 1.4e-47
                           TS-SSGGG--.-EEEEEE-HHH....HGGGTTGGG-SEEEEEEE-TTS...-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEEEE CS
                  TrmO   1 giPrqpglaeeaeaeielepey..nseealegleefshlwllfvfhenaekklkakvrpprlggnervGvfatRsphRpnpiglsvvkl 87 
                           g+Prqp+++++++a +++++++  n+e++l gleefsh+w+lfvfh+n + ++kakv+pprl+g +++Gvf+tRsphRpn+igl+++kl
  sp|Q562D6|TRMO_MOUSE  45 GTPRQPSICSHSRACLKIRKNIfnNPEHSLMGLEEFSHVWILFVFHKNGHLNYKAKVQPPRLNG-AKTGVFSTRSPHRPNAIGLTLAKL 132
                           79*****************997667899********************99999**********9.666********************* PP

                           EEEETTEEEEES----TT-EEEEEEE--HHHH CS
                  TrmO  88 ekvegnvlevsgvDlldgtpvlDiKPYvpyaD 119
                           ekveg  +++sgvD++dgtpvlDiKPY++++D
  sp|Q562D6|TRMO_MOUSE 133 EKVEGGAVYLSGVDMIDGTPVLDIKPYIADYD 164
                           *****************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (119 nodes)
Target sequences:                        22289  (11757923 residues searched)
Passed MSV filter:                       282  (0.012652); expected 445.8 (0.02)
Passed bias filter:                      255  (0.0114406); expected 445.8 (0.02)
Passed Vit filter:                        12  (0.000538382); expected 22.3 (0.001)
Passed Fwd filter:                         1  (4.48652e-05); expected 0.2 (1e-05)
Initial search space (Z):              22289  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.01s 00:00:00.12 Elapsed: 00:00:00.07
# Mc/sec: 19988.47
//
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