# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TrmO.hmm.txt
# target sequence database: proteomes/Natronomonas_moolapensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TrmO [M=119]
Accession: PF01980.16
Description: tRNA-methyltransferase O
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-40 134.5 0.0 3.6e-40 134.2 0.0 1.1 1 tr|M1XKX6|M1XKX6_NATM8 UPF0066 family protein OS=Natronomona
Domain annotation for each sequence (and alignments):
>> tr|M1XKX6|M1XKX6_NATM8 UPF0066 family protein OS=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) OX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 134.2 0.0 1.3e-43 3.6e-40 1 119 [] 23 136 .. 23 136 .. 0.95
Alignments for each domain:
== domain 1 score: 134.2 bits; conditional E-value: 1.3e-43
TS-SSGGG--.-EEEEEE-HHH..HGGGTTGGG-SEEEEEEE-TTS...-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEEEE CS
TrmO 1 giPrqpglaeeaeaeielepeynseealegleefshlwllfvfhenaekklkakvrpprlggnervGvfatRsphRpnpiglsvvkl 87
g+P+qp+ a++a ++++++++y +++l++l++f+h++ll++fh++ ++ ++ ++p+l++++r GvfatR+p+Rpn+iglsvv++
tr|M1XKX6|M1XKX6_NATM8 23 GMPIQPTGADDAAGTVKVDESY--ADGLQDLDGFTHCILLYHFHAS--GDTASLQVEPFLDDEKR-GVFATRAPQRPNQIGLSVVEI 104
79********************..********************98..344577889****9777.********************* PP
EEEETTEEEEES----TT-EEEEEEE--HHHH CS
TrmO 88 ekvegnvlevsgvDlldgtpvlDiKPYvpyaD 119
e+v+++ ++v+g+D++d+tp+lDiKP+vp++D
tr|M1XKX6|M1XKX6_NATM8 105 ESVRDHEVTVRGIDVVDQTPLLDIKPFVPDFD 136
******************************99 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (119 nodes)
Target sequences: 2723 (809592 residues searched)
Passed MSV filter: 32 (0.0117517); expected 54.5 (0.02)
Passed bias filter: 31 (0.0113845); expected 54.5 (0.02)
Passed Vit filter: 2 (0.000734484); expected 2.7 (0.001)
Passed Fwd filter: 1 (0.000367242); expected 0.0 (1e-05)
Initial search space (Z): 2723 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01
# Mc/sec: 9634.14
//
[ok]