# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/TrmO.hmm.txt
# target sequence database:        proteomes/Nematostella_vectensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       TrmO  [M=119]
Accession:   PF01980.16
Description: tRNA-methyltransferase O
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
  ------ inclusion threshold ------
      0.081   13.6   0.1        2.1    9.0   0.0    2.2  2  tr|A7T5T4|A7T5T4_NEMVE  Predicted protein (Fragment) OS=Nemat


Domain annotation for each sequence (and alignments):
>> tr|A7T5T4|A7T5T4_NEMVE  Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g147087 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.009   2.2e+02      14     100 ..      31     115 ..      22     120 .. 0.67
   2 ?    9.0   0.0   8.7e-05       2.1      79     116 ..     154     195 ..     147     198 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.009
                             EEEEE-HHH..HGGGTTGGG-SEEEEEEE-TTS...-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEEEEEEEE..TTEEEEE CS
                    TrmO  14 aeielepeynseealegleefshlwllfvfhenaekklkakvrpprlggnervGvfatRsphRpnpiglsvvklekve..gnvlevs 98 
                               i+ +++++s +    ++ +s + +l  fh+   ++  ++v+++ ++     Gv      + pn ++l   ++e+v   g ++++ 
  tr|A7T5T4|A7T5T4_NEMVE  31 RIIHAFSKVKSVKINYAVKALSNINILKLFHQL-GAG-LDTVSEQEVQLGLTAGVAPENIIFTPNGVSL--EEIEEVAklGVQINID 113
                             556667777777777788999999999999987.444.5666666665556678888888888886555..4555555335666666 PP

                             S- CS
                    TrmO  99 gv 100
                             ++
  tr|A7T5T4|A7T5T4_NEMVE 114 NL 115
                             55 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 8.7e-05
                             -EEEEEEEEEEEE....TTEEEEES----TT-EEEEEEE--H CS
                    TrmO  79 piglsvvklekve....gnvlevsgvDlldgtpvlDiKPYvp 116
                             + g+s+ ++ +++    ++ ++++g+ +  g+ +lDi  +++
  tr|A7T5T4|A7T5T4_NEMVE 154 KFGISIYQVPHIKriveNTGMHINGIHMHTGSDILDIDTFIR 195
                             67888888888887776799*****************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (119 nodes)
Target sequences:                        24428  (8257945 residues searched)
Passed MSV filter:                       283  (0.0115851); expected 488.6 (0.02)
Passed bias filter:                      235  (0.00962011); expected 488.6 (0.02)
Passed Vit filter:                        17  (0.000695923); expected 24.4 (0.001)
Passed Fwd filter:                         2  (8.18733e-05); expected 0.2 (1e-05)
Initial search space (Z):              24428  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.00s 00:00:00.09 Elapsed: 00:00:00.06
# Mc/sec: 16378.26
//
[ok]