# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TrmO.hmm.txt
# target sequence database: proteomes/Ornithorhynchus_anatinus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TrmO [M=119]
Accession: PF01980.16
Description: tRNA-methyltransferase O
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.1e-42 143.4 0.0 6.5e-42 142.8 0.0 1.3 1 tr|F6SJZ1|F6SJZ1_ORNAN Uncharacterized protein OS=Ornithorhy
------ inclusion threshold ------
0.051 14.1 0.0 0.097 13.2 0.0 1.4 1 tr|F7CP83|F7CP83_ORNAN Coiled-coil domain containing 92 OS=O
Domain annotation for each sequence (and alignments):
>> tr|F6SJZ1|F6SJZ1_ORNAN Uncharacterized protein OS=Ornithorhynchus anatinus OX=9258 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 142.8 0.0 6e-46 6.5e-42 1 119 [] 20 139 .. 20 139 .. 0.95
Alignments for each domain:
== domain 1 score: 142.8 bits; conditional E-value: 6e-46
TS-SSGGG--.-EEEEEE-HHH....HGGGTTGGG-SEEEEEEE-TTS...-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEE CS
TrmO 1 giPrqpglaeeaeaeielepey..nseealegleefshlwllfvfhenaekklkakvrpprlggnervGvfatRsphRpnpiglsvv 85
g+Prqp+++++++a +++++++ n+e++l gle+fsh+w+lfvfh+n + + kakv+pprl+g +++Gvf+tRsphRpn+igl+++
tr|F6SJZ1|F6SJZ1_ORNAN 20 GTPRQPSVCSSSRACLRIRKDIfnNPEHSLMGLEQFSHVWILFVFHKNGHLSRKAKVQPPRLNG-AKTGVFSTRSPHRPNAIGLTLA 105
79*****************987657899********************88888**********9.666******************* PP
EEEEEETTEEEEES----TT-EEEEEEE--HHHH CS
TrmO 86 klekvegnvlevsgvDlldgtpvlDiKPYvpyaD 119
klekveg vl++sg+D++++tpvlD+KPY++++D
tr|F6SJZ1|F6SJZ1_ORNAN 106 KLEKVEGGVLYLSGIDMINDTPVLDVKPYIAEYD 139
*******************************998 PP
>> tr|F7CP83|F7CP83_ORNAN Coiled-coil domain containing 92 OS=Ornithorhynchus anatinus OX=9258 GN=CCDC92 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.2 0.0 9e-06 0.097 9 100 .. 89 176 .. 85 191 .. 0.79
Alignments for each domain:
== domain 1 score: 13.2 bits; conditional E-value: 9e-06
--.-EEEEEE-HHH..HGGGTTGGG-SEEEEEEE-TTS...-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEEEEEEEETTEE CS
TrmO 9 aeeaeaeielepeynseealegleefshlwllfvfhenaekklkakvrpprlggnervGvfatRsphRpnpiglsvvklekvegnvl 95
+ee+ea+++++++ ++e l++le+ + ++++ + ++ k+ +++ +++ ++++ v+++ +R + i+ +++l++ +++ l
tr|F7CP83|F7CP83_ORNAN 89 CEELEAQLKVKEDE-NNELLRELEQKNAMIMVLENTIK--EREKKYLEELKMK-SHKLNVLSSELEQRASTIAYLTAQLHATKKKLL 171
56788999998887.899*******9998877666544..4435667777776.5899************************99998 PP
EEES- CS
TrmO 96 evsgv 100
sg+
tr|F7CP83|F7CP83_ORNAN 172 SSSGT 176
87764 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (119 nodes)
Target sequences: 21677 (8259262 residues searched)
Passed MSV filter: 317 (0.0146238); expected 433.5 (0.02)
Passed bias filter: 287 (0.0132398); expected 433.5 (0.02)
Passed Vit filter: 24 (0.00110716); expected 21.7 (0.001)
Passed Fwd filter: 2 (9.22637e-05); expected 0.2 (1e-05)
Initial search space (Z): 21677 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.08u 0.00s 00:00:00.08 Elapsed: 00:00:00.05
# Mc/sec: 19657.04
//
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