# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/TrmO.hmm.txt # target sequence database: proteomes/Ornithorhynchus_anatinus.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TrmO [M=119] Accession: PF01980.16 Description: tRNA-methyltransferase O Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-42 143.4 0.0 6.5e-42 142.8 0.0 1.3 1 tr|F6SJZ1|F6SJZ1_ORNAN Uncharacterized protein OS=Ornithorhy ------ inclusion threshold ------ 0.051 14.1 0.0 0.097 13.2 0.0 1.4 1 tr|F7CP83|F7CP83_ORNAN Coiled-coil domain containing 92 OS=O Domain annotation for each sequence (and alignments): >> tr|F6SJZ1|F6SJZ1_ORNAN Uncharacterized protein OS=Ornithorhynchus anatinus OX=9258 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 142.8 0.0 6e-46 6.5e-42 1 119 [] 20 139 .. 20 139 .. 0.95 Alignments for each domain: == domain 1 score: 142.8 bits; conditional E-value: 6e-46 TS-SSGGG--.-EEEEEE-HHH....HGGGTTGGG-SEEEEEEE-TTS...-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEE CS TrmO 1 giPrqpglaeeaeaeielepey..nseealegleefshlwllfvfhenaekklkakvrpprlggnervGvfatRsphRpnpiglsvv 85 g+Prqp+++++++a +++++++ n+e++l gle+fsh+w+lfvfh+n + + kakv+pprl+g +++Gvf+tRsphRpn+igl+++ tr|F6SJZ1|F6SJZ1_ORNAN 20 GTPRQPSVCSSSRACLRIRKDIfnNPEHSLMGLEQFSHVWILFVFHKNGHLSRKAKVQPPRLNG-AKTGVFSTRSPHRPNAIGLTLA 105 79*****************987657899********************88888**********9.666******************* PP EEEEEETTEEEEES----TT-EEEEEEE--HHHH CS TrmO 86 klekvegnvlevsgvDlldgtpvlDiKPYvpyaD 119 klekveg vl++sg+D++++tpvlD+KPY++++D tr|F6SJZ1|F6SJZ1_ORNAN 106 KLEKVEGGVLYLSGIDMINDTPVLDVKPYIAEYD 139 *******************************998 PP >> tr|F7CP83|F7CP83_ORNAN Coiled-coil domain containing 92 OS=Ornithorhynchus anatinus OX=9258 GN=CCDC92 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 0.0 9e-06 0.097 9 100 .. 89 176 .. 85 191 .. 0.79 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 9e-06 --.-EEEEEE-HHH..HGGGTTGGG-SEEEEEEE-TTS...-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEEEEEEEETTEE CS TrmO 9 aeeaeaeielepeynseealegleefshlwllfvfhenaekklkakvrpprlggnervGvfatRsphRpnpiglsvvklekvegnvl 95 +ee+ea+++++++ ++e l++le+ + ++++ + ++ k+ +++ +++ ++++ v+++ +R + i+ +++l++ +++ l tr|F7CP83|F7CP83_ORNAN 89 CEELEAQLKVKEDE-NNELLRELEQKNAMIMVLENTIK--EREKKYLEELKMK-SHKLNVLSSELEQRASTIAYLTAQLHATKKKLL 171 56788999998887.899*******9998877666544..4435667777776.5899************************99998 PP EEES- CS TrmO 96 evsgv 100 sg+ tr|F7CP83|F7CP83_ORNAN 172 SSSGT 176 87764 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (119 nodes) Target sequences: 21677 (8259262 residues searched) Passed MSV filter: 317 (0.0146238); expected 433.5 (0.02) Passed bias filter: 287 (0.0132398); expected 433.5 (0.02) Passed Vit filter: 24 (0.00110716); expected 21.7 (0.001) Passed Fwd filter: 2 (9.22637e-05); expected 0.2 (1e-05) Initial search space (Z): 21677 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.08u 0.00s 00:00:00.08 Elapsed: 00:00:00.05 # Mc/sec: 19657.04 // [ok]