# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/TrmO.hmm.txt # target sequence database: proteomes/Strongylocentrotus_purpuratus.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TrmO [M=119] Accession: PF01980.16 Description: tRNA-methyltransferase O Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-33 114.8 0.0 7.4e-33 113.9 0.0 1.4 1 tr|W4ZA21|W4ZA21_STRPU Uncharacterized protein OS=Strongyloc Domain annotation for each sequence (and alignments): >> tr|W4ZA21|W4ZA21_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 113.9 0.0 2.6e-37 7.4e-33 28 119 .] 34 125 .. 9 125 .. 0.86 Alignments for each domain: == domain 1 score: 113.9 bits; conditional E-value: 2.6e-37 GTTGGG-SEEEEEEE-TTS...-..SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEEEEEEEETTEEEEES----TT-EEEEEEE CS TrmO 28 legleefshlwllfvfhenaekk.lkakvrpprlggnervGvfatRsphRpnpiglsvvklekvegnvlevsgvDlldgtpvlDiKP 113 l+ + + ++ ++fvfhen++++ +kakv+pprl+g ++vGvfa+RsphRpnpigl++++l+kveg++l++sg+D++dgtpvlD+KP tr|W4ZA21|W4ZA21_STRPU 34 LSLTSPIGYIRVMFVFHENSQENfTKAKVKPPRLDG-KKVGVFASRSPHRPNPIGLTLARLDKVEGDTLYLSGMDMIDGTPVLDVKP 119 55555677999******9977763599********9.899*********************************************** PP --HHHH CS TrmO 114 YvpyaD 119 Yv+++D tr|W4ZA21|W4ZA21_STRPU 120 YVSDYD 125 ***998 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (119 nodes) Target sequences: 28594 (14266044 residues searched) Passed MSV filter: 406 (0.0141988); expected 571.9 (0.02) Passed bias filter: 349 (0.0122054); expected 571.9 (0.02) Passed Vit filter: 28 (0.000979226); expected 28.6 (0.001) Passed Fwd filter: 1 (3.49724e-05); expected 0.3 (1e-05) Initial search space (Z): 28594 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.14u 0.01s 00:00:00.15 Elapsed: 00:00:00.09 # Mc/sec: 18862.88 // [ok]