# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TrmO.hmm.txt
# target sequence database: proteomes/Thermococcus_kodakarensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TrmO [M=119]
Accession: PF01980.16
Description: tRNA-methyltransferase O
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.6e-41 136.4 0.0 8e-41 136.1 0.0 1.1 1 tr|Q5JG53|Q5JG53_THEKO Uncharacterized protein OS=Thermococc
5.2e-26 88.3 0.0 9e-26 87.6 0.0 1.3 1 tr|Q5JED3|Q5JED3_THEKO Uncharacterized protein OS=Thermococc
Domain annotation for each sequence (and alignments):
>> tr|Q5JG53|Q5JG53_THEKO Uncharacterized protein OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 136.1 0.0 6.9e-44 8e-41 1 119 [] 29 141 .. 29 141 .. 0.97
Alignments for each domain:
== domain 1 score: 136.1 bits; conditional E-value: 6.9e-44
TS-SSGGG--.-EEEEEE-HHH..HGGGTTGGG-SEEEEEEE-TTS...-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEEEE CS
TrmO 1 giPrqpglaeeaeaeielepeynseealegleefshlwllfvfhenaekklkakvrpprlggnervGvfatRsphRpnpiglsvvkl 87
++P+q++ a+ +++++ ++pe+ ee+l+++e+fsh++l+++fh++ ++k++++ p +++n + GvfatR+p Rpnpig+s+v+l
tr|Q5JG53|Q5JG53_THEKO 29 DVPIQASAARGIRGTVDVFPEF--EEGLKDIEGFSHVILIYHFHRA---RFKSLLVRPYMDENYH-GVFATRAPARPNPIGISIVRL 109
58********************..********************99...7899********9888.********************* PP
EEEETTEEEEES----TT-EEEEEEE--HHHH CS
TrmO 88 ekvegnvlevsgvDlldgtpvlDiKPYvpyaD 119
+ +gnvl v++vD+ldgtp+lDiKPYvp++D
tr|Q5JG53|Q5JG53_THEKO 110 VERRGNVLIVEDVDVLDGTPLLDIKPYVPEFD 141
******************************99 PP
>> tr|Q5JED3|Q5JED3_THEKO Uncharacterized protein OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 87.6 0.0 7.8e-29 9e-26 13 119 .] 22 128 .. 15 128 .. 0.87
Alignments for each domain:
== domain 1 score: 87.6 bits; conditional E-value: 7.8e-29
EEEEEE-HHH..HGGGTTGGG-SEEEEEEE-TTS...-.S..S--E-TT-.SS-E.EGGGS--S-SSS-EEEEEEEEEEEETTEEEE CS
TrmO 13 eaeielepeynseealegleefshlwllfvfhenaekklk..akvrpprlggnervGvfatRsphRpnpiglsvvklekvegnvlev 97
e+ ie+ pe+ + a++gl e + + l+ +fhe+++ + + kv+p +n +GvfatRsp+Rpnpi+l +v+++++++n+l++
tr|Q5JED3|Q5JED3_THEKO 22 ETFIEILPEF--RGAIDGLREGDWIKLVLWFHESDTPARRrvLKVHPYGNPKNPLTGVFATRSPYRPNPIALYTVRVHRIDENRLYI 106
67799*****..99******************995544330144455555677889******************************* PP
ES----TT-EEEEEEE--HHHH CS
TrmO 98 sgvDlldgtpvlDiKPYvpyaD 119
+D+ dgtpv+DiK +v+++D
tr|Q5JED3|Q5JED3_THEKO 107 DWIDAHDGTPVVDIKIFVERYD 128
*******************998 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (119 nodes)
Target sequences: 2301 (637680 residues searched)
Passed MSV filter: 30 (0.0130378); expected 46.0 (0.02)
Passed bias filter: 28 (0.0121686); expected 46.0 (0.02)
Passed Vit filter: 3 (0.00130378); expected 2.3 (0.001)
Passed Fwd filter: 2 (0.000869187); expected 0.0 (1e-05)
Initial search space (Z): 2301 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00
# Mc/sec: inf
//
[ok]