# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/TrmO.hmm.txt
# target sequence database:        proteomes/Trichoplax_adhaerens.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       TrmO  [M=119]
Accession:   PF01980.16
Description: tRNA-methyltransferase O
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    1.8e-45  153.4   0.0    2.8e-45  152.7   0.0    1.3  1  tr|B3S8C2|B3S8C2_TRIAD  Uncharacterized protein OS=Trichoplax


Domain annotation for each sequence (and alignments):
>> tr|B3S8C2|B3S8C2_TRIAD  Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_60485 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.7   0.0   2.4e-49   2.8e-45       1     119 []      24     142 ..      24     142 .. 0.96

  Alignments for each domain:
  == domain 1  score: 152.7 bits;  conditional E-value: 2.4e-49
                             TS-SSGGG--.-EEEEEE-HHH...HGGGTTGGG-SEEEEEEE-TTS...-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEEE CS
                    TrmO   1 giPrqpglaeeaeaeielepey.nseealegleefshlwllfvfhenaekklkakvrpprlggnervGvfatRsphRpnpiglsvvk 86 
                             g Prqp+++++++a++ +e+++ n++++l  l++fsh+wl+f fh n++++++ak++pprl+g e++Gvfa+RsphRpnpigl+++k
  tr|B3S8C2|B3S8C2_TRIAD  24 GSPRQPSVCRQSRAQLAIESNFtNPHHSLMSLQQFSHVWLIFLFHMNENTHVRAKIKPPRLDG-EKIGVFASRSPHRPNPIGLTLAK 109
                             57*****************998456799*****************9999999**********9.899******************** PP

                             EEEEETTEEEEES----TT-EEEEEEE--HHHH CS
                    TrmO  87 lekvegnvlevsgvDlldgtpvlDiKPYvpyaD 119
                             l+kv+gn++++sg+D++dgtp+lDiKPY+p++D
  tr|B3S8C2|B3S8C2_TRIAD 110 LDKVDGNIIHLSGIDIVDGTPILDIKPYIPDYD 142
                             *******************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (119 nodes)
Target sequences:                        11518  (5222075 residues searched)
Passed MSV filter:                       202  (0.0175378); expected 230.4 (0.02)
Passed bias filter:                      172  (0.0149331); expected 230.4 (0.02)
Passed Vit filter:                        11  (0.000955027); expected 11.5 (0.001)
Passed Fwd filter:                         1  (8.68206e-05); expected 0.1 (1e-05)
Initial search space (Z):              11518  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.03
# Mc/sec: 20714.23
//
[ok]