# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/TrmO.hmm.txt
# target sequence database:        proteomes/Trypanosoma_brucei.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       TrmO  [M=119]
Accession:   PF01980.16
Description: tRNA-methyltransferase O
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
      5e-31  106.4   0.0      8e-30  102.5   0.0    2.2  1  tr|Q57XM2|Q57XM2_TRYB2  Uncharacterized protein OS=Trypanosom


Domain annotation for each sequence (and alignments):
>> tr|Q57XM2|Q57XM2_TRYB2  Uncharacterized protein OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   9.4e-34     8e-30       2     119 .]     190     349 ..     189     349 .. 0.89

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 9.4e-34
                             S-SSGGG--.-EEEEEE-HHH..HGGGTTGGG-SEEEEEEE-TTS.......................................... CS
                    TrmO   2 iPrqpglaeeaeaeielepeynseealegleefshlwllfvfhen.......................................... 46 
                             +Prqp++ + +  + +++ ++  e+a+++l++f+++w+lf f+ +                                          
  tr|Q57XM2|Q57XM2_TRYB2 190 APRQPHTENFMPQTAVIRLRVGLENAVRDLKGFEYIWVLFSFSYAlpvdeectqakdsataaddtggvkgdraevavgakrqrprqg 276
                             69***988877666666666666********************888****************9999999999999999888777766 PP

                             .....-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEEEEEEEETTEEEEES----TT-EEEEEEE--HHHH CS
                    TrmO  47 ..aekklkakvrpprlggnervGvfatRsphRpnpiglsvvklekvegnvlevsgvDlldgtpvlDiKPYvpyaD 119
                               +++++k++++ppr   + r GvfatRsphRpn igls+v+l +v+g  +++++ Dll+gtpvlDiKPY+p++D
  tr|Q57XM2|Q57XM2_TRYB2 277 aeRSAGFKTMLVPPRDS-ELR-GVFATRSPHRPNFIGLSCVRLVDVRGLEVHIADHDLLHGTPVLDIKPYLPFCD 349
                             55445579999999965.466.***************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (119 nodes)
Target sequences:                         8561  (4332363 residues searched)
Passed MSV filter:                       128  (0.0149515); expected 171.2 (0.02)
Passed bias filter:                      121  (0.0141339); expected 171.2 (0.02)
Passed Vit filter:                         4  (0.000467235); expected 8.6 (0.001)
Passed Fwd filter:                         1  (0.000116809); expected 0.1 (1e-05)
Initial search space (Z):               8561  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.06u 0.00s 00:00:00.06 Elapsed: 00:00:00.04
# Mc/sec: 12888.78
//
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