# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/TrmO.hmm.txt
# target sequence database:        proteomes/Xenopus_tropicalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       TrmO  [M=119]
Accession:   PF01980.16
Description: tRNA-methyltransferase O
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    3.1e-43  147.2   0.0      5e-43  146.5   0.0    1.3  1  tr|F7AA52|F7AA52_XENTR  tRNA methyltransferase O OS=Xenopus t


Domain annotation for each sequence (and alignments):
>> tr|F7AA52|F7AA52_XENTR  tRNA methyltransferase O OS=Xenopus tropicalis OX=8364 GN=trmo PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.5   0.0   2.1e-47     5e-43       1     119 []      49     168 ..      49     168 .. 0.96

  Alignments for each domain:
  == domain 1  score: 146.5 bits;  conditional E-value: 2.1e-47
                             TS-SSGGG--.-EEEEEE-HHH....HGGGTTGGG-SEEEEEEE-TTS...-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEE CS
                    TrmO   1 giPrqpglaeeaeaeielepey..nseealegleefshlwllfvfhenaekklkakvrpprlggnervGvfatRsphRpnpiglsvv 85 
                             g+Prqp++++ +++++++++++  n+e++l g+e+fsh+w+lfvfh+n + ++kakv+pprl+g +++Gvf+tRsphRpn+igl++v
  tr|F7AA52|F7AA52_XENTR  49 GTPRQPSVCSLSRGRLRISKSVfnNPEHSLIGIEQFSHVWILFVFHKNGRLSCKAKVQPPRLNG-AKTGVFSTRSPHRPNAIGLTLV 134
                             79*****************887657899********************99999**********9.666******************* PP

                             EEEEEETTEEEEES----TT-EEEEEEE--HHHH CS
                    TrmO  86 klekvegnvlevsgvDlldgtpvlDiKPYvpyaD 119
                             +lekveg++l++sg+D+++gtpv+DiKPY+p++D
  tr|F7AA52|F7AA52_XENTR 135 RLEKVEGSTLYLSGIDIIHGTPVIDIKPYIPEYD 168
                             ********************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (119 nodes)
Target sequences:                        24182  (11782085 residues searched)
Passed MSV filter:                       314  (0.0129849); expected 483.6 (0.02)
Passed bias filter:                      286  (0.011827); expected 483.6 (0.02)
Passed Vit filter:                        19  (0.000785708); expected 24.2 (0.001)
Passed Fwd filter:                         1  (4.13531e-05); expected 0.2 (1e-05)
Initial search space (Z):              24182  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.01s 00:00:00.15 Elapsed: 00:00:00.08
# Mc/sec: 17525.85
//
[ok]