# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/TruB_N.hmm.txt # target sequence database: proteomes/Amphimedon_queenslandica.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TruB_N [M=149] Accession: PF01509.17 Description: TruB family pseudouridylate synthase (N terminal domain) Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-46 158.3 0.1 5.5e-46 157.9 0.1 1.1 1 tr|A0A1X7VUQ6|A0A1X7VUQ6_AMPQE Uncharacterized protein OS=Amphi 4.8e-23 83.4 0.5 4.2e-20 73.9 0.5 3.4 1 tr|A0A1X7V526|A0A1X7V526_AMPQE Uncharacterized protein OS=Amphi Domain annotation for each sequence (and alignments): >> tr|A0A1X7VUQ6|A0A1X7VUQ6_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 157.9 0.1 2.5e-50 5.5e-46 7 149 .] 47 191 .. 39 191 .. 0.95 Alignments for each domain: == domain 1 score: 157.9 bits; conditional E-value: 2.5e-50 S-EEESS---TT-EEEEEEEEGGGGGGHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC- CS TruB_N 7 kkvGhtGtLDplatGvLvvavgeaTklleylleadKeYeatirlgaetdteDaegeileeekveklteekleevlkkft 85 kvGh+GtLD+ a+GvLvv+vge +k l+++l+ +KeY a lg++t+t+Da+g +++++++++t+e+l++v+++f+ tr|A0A1X7VUQ6|A0A1X7VUQ6_AMPQE 47 FKVGHGGTLDKEAEGVLVVGVGEDCKHLSSFLSGSKEYSAIGILGKTTTTYDATGSEIKTSTYDHVTQESLQRVVRSFE 125 3***********************************************************99***************** PP EEE-------------------------------..--EEEEEEEEEEEEEEEEEEEEEESTTTTH CS TruB_N 86 GeieqvppmySAvkvnGkrlyelaregeeverkk..rkvtiyelelleveepevelevecskGtYi 149 Ge q+pp+ySA+k++G+r+ +lar+ge+v++++ r++ iy+++l +++pe+ + ++cs+GtY+ tr|A0A1X7VUQ6|A0A1X7VUQ6_AMPQE 126 GETLQTPPVYSALKIKGQRASNLARKGETVDMSSkrRPICIYQIKLQMFSPPEFGIVLSCSAGTYV 191 ***************************99986544499***************************8 PP >> tr|A0A1X7V526|A0A1X7V526_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.9 0.5 1.9e-24 4.2e-20 1 149 [] 103 218 .. 103 218 .. 0.95 Alignments for each domain: == domain 1 score: 73.9 bits; conditional E-value: 1.9e-24 HHHTT-S-EEESS---TT-EEEEEEEEGGGGGGHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHH CS TruB_N 1 krllkakkvGhtGtLDplatGvLvvavgeaTklleylleadKeYeatirlgaetdteDaegeileeekveklteeklee 79 kr+l+++k Gh+GtLDp++tG+L+v+++++T+l+++ + a KeY++++++++e ++ D + + tr|A0A1X7V526|A0A1X7V526_AMPQE 103 KRILRVEKTGHSGTLDPQVTGCLIVCIDRTTRLVKSQQGAGKEYVCVVKFHKEAKESD------------------IVK 163 89**************************************************999998..................668 PP HHHHC-EEE---------------------------------EEEEEEEEEEEEEE..EEEEEEEESTTTTH CS TruB_N 80 vlkkftGeieqvppmySAvkvnGkrlyelaregeeverkkrkvtiyelelleveep..evelevecskGtYi 149 +l+++ G++ q+pp +SAvk r+ r tiye +lle++++ + v+c++GtYi tr|A0A1X7V526|A0A1X7V526_AMPQE 164 ILQTMVGSLFQRPPLISAVK-----------------RQLRIRTIYENKLLEYDDQrhLGVFWVSCEAGTYI 218 9*******************.................999*************9886677899********8 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (149 nodes) Target sequences: 43435 (14716620 residues searched) Passed MSV filter: 1291 (0.0297226); expected 868.7 (0.02) Passed bias filter: 858 (0.0197537); expected 868.7 (0.02) Passed Vit filter: 40 (0.000920916); expected 43.4 (0.001) Passed Fwd filter: 2 (4.60458e-05); expected 0.4 (1e-05) Initial search space (Z): 43435 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.19u 0.01s 00:00:00.20 Elapsed: 00:00:00.09 # Mc/sec: 24364.18 // [ok]