# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TruB_N.hmm.txt
# target sequence database: proteomes/Anolis_carolinensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TruB_N [M=149]
Accession: PF01509.17
Description: TruB family pseudouridylate synthase (N terminal domain)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.3e-41 141.1 0.0 4.5e-41 140.7 0.0 1.2 1 tr|H9GF07|H9GF07_ANOCA TruB pseudouridine synthase family me
4.4e-23 82.3 0.0 6.4e-23 81.8 0.0 1.2 1 tr|H9GCK4|H9GCK4_ANOCA TruB pseudouridine synthase family me
5.3e-22 78.8 0.1 3.3e-19 69.8 0.1 3.3 1 tr|H9GMK0|H9GMK0_ANOCA Dyskerin pseudouridine synthase 1 OS=
Domain annotation for each sequence (and alignments):
>> tr|H9GF07|H9GF07_ANOCA TruB pseudouridine synthase family member 1 OS=Anolis carolinensis OX=28377 GN=TRUB1 PE=3 SV=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 140.7 0.0 7.2e-45 4.5e-41 2 149 .] 51 199 .. 49 199 .. 0.97
Alignments for each domain:
== domain 1 score: 140.7 bits; conditional E-value: 7.2e-45
HHTT-S-EEESS---TT-EEEEEEEEGGGGGGHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EEE CS
TruB_N 2 rllkakkvGhtGtLDplatGvLvvavgeaTklleylleadKeYeatirlgaetdteDaegeileeekveklteekleevlkkftGei 88
+ ++ k+Gh+G LD + vv+vg++Tk+l+ +l+ +K+Y+a+ +lg++tdt D++g+++ee+ ++++t+e+le+vl+kftG+i
tr|H9GF07|H9GF07_ANOCA 51 KRSHMLKIGHGGILDSCFFFLTVVGVGKGTKMLSGMLTGSKKYTAVGELGKATDTFDSSGKVTEEKPYDQITKEDLENVLQKFTGNI 137
556678***********************************************************99******************** PP
-------------------------------.--EEEEEEEEEEEEEEEEEEEEEESTTTTH CS
TruB_N 89 eqvppmySAvkvnGkrlyelaregeeverkk.rkvtiyelelleveepevelevecskGtYi 149
+qvpp ySA+k+ G+rl +l+++ge ve k+ r+v +y+l+l ++++p ++++vec G+Y+
tr|H9GF07|H9GF07_ANOCA 138 MQVPPLYSALKKGGQRLSTLVKKGELVEAKPaRPVVVYNLTLKNFKPPLFTIDVECGGGFYV 199
****************************8877*****************************7 PP
>> tr|H9GCK4|H9GCK4_ANOCA TruB pseudouridine synthase family member 2 OS=Anolis carolinensis OX=28377 GN=TRUB2 PE=4 SV=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 81.8 0.0 1e-26 6.4e-23 6 147 .. 93 236 .. 89 238 .. 0.96
Alignments for each domain:
== domain 1 score: 81.8 bits; conditional E-value: 1e-26
-S-EEESS---TT-EEEEEEEEGGGGGGHHHCTTS-..EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EEE-- CS
TruB_N 6 akkvGhtGtLDplatGvLvvavgeaTklleyllead..KeYeatirlgaetdteDaegeileeekveklteekleevlkkftGeieq 90
kvG ++ LD +++Gv v+++g++ kll+ l +a+ ++Y++ +g++td+ eg+ +e+++ +++t+ekle++l+ ++G+ ++
tr|H9GCK4|H9GCK4_ANOCA 93 RLKVGAGHRLDIKSSGVFVLGLGHGNKLLHDLYNAHlsRTYTVRGLFGKATDDFSDEGKLIEKTTFDHITREKLERILSVIQGSHHK 179
559*****************************987666*************************99********************** PP
-------------------------------EEEEEEEEEEEEEEEEEEEEEESTTT CS
TruB_N 91 vppmySAvkvnGkrlyelaregeeverkkrkvtiyelelleveepevelevecskGt 147
+y++++ + +++yela +g + k + i+++++l++ +pe++le++c + t
tr|H9GCK4|H9GCK4_ANOCA 180 ALLQYANLDLKTQEAYELAVRGLIRPMDKSPPLITAVRCLQFAPPEFQLEIHCLHET 236
*****************************************************9887 PP
>> tr|H9GMK0|H9GMK0_ANOCA Dyskerin pseudouridine synthase 1 OS=Anolis carolinensis OX=28377 GN=DKC1 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 69.8 0.1 5.4e-23 3.3e-19 1 149 [] 172 288 .. 172 288 .. 0.93
Alignments for each domain:
== domain 1 score: 69.8 bits; conditional E-value: 5.4e-23
HHHTT-S-EEESS---TT-EEEEEEEEGGGGGGHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EE CS
TruB_N 1 krllkakkvGhtGtLDplatGvLvvavgeaTklleylleadKeYeatirlgaetdteDaegeileeekveklteekleevlkkftGe 87
+r+l+++k Gh+GtLDp++tG+L+v++++aT+l+++ ++a KeY+ +rl+ + ++e +l+++++++tG+
tr|H9GMK0|H9GMK0_ANOCA 172 RRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIESET-----------------QLSRAIETLTGA 241
89************************************************99877654.................69999******* PP
E---------------------------------EEEEEEEEEEEEEE..EEEEEEEESTTTTH CS
TruB_N 88 ieqvppmySAvkvnGkrlyelaregeeverkkrkvtiyelelleveep..evelevecskGtYi 149
+ q+pp ++Avk r+ r tiye +l+e++++ + v+c++GtYi
tr|H9GMK0|H9GMK0_ANOCA 242 LFQRPPLIAAVK-----------------RQLRVRTIYESKLVEYDPErrLGIFWVSCEAGTYI 288
************.................89999999999999999886567899999999998 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (149 nodes)
Target sequences: 18528 (9796552 residues searched)
Passed MSV filter: 641 (0.0345963); expected 370.6 (0.02)
Passed bias filter: 452 (0.0243955); expected 370.6 (0.02)
Passed Vit filter: 33 (0.00178109); expected 18.5 (0.001)
Passed Fwd filter: 3 (0.000161917); expected 0.2 (1e-05)
Initial search space (Z): 18528 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.13u 0.01s 00:00:00.14 Elapsed: 00:00:00.05
# Mc/sec: 29193.72
//
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