# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TruB_N.hmm.txt
# target sequence database: proteomes/Ciona_savignyi.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TruB_N [M=149]
Accession: PF01509.17
Description: TruB family pseudouridylate synthase (N terminal domain)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.4e-23 82.1 4.0 3.3e-21 75.6 0.1 3.6 2 tr|H2ZHM3|H2ZHM3_CIOSA Uncharacterized protein OS=Ciona savi
4.2e-11 42.8 0.0 7.1e-11 42.1 0.0 1.2 1 tr|H2YML1|H2YML1_CIOSA Uncharacterized protein OS=Ciona savi
Domain annotation for each sequence (and alignments):
>> tr|H2ZHM3|H2ZHM3_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 75.6 0.1 5.7e-25 3.3e-21 1 149 [] 100 216 .. 100 216 .. 0.94
2 ? -3.0 0.7 0.94 5.4e+03 62 77 .. 469 479 .. 449 497 .. 0.45
Alignments for each domain:
== domain 1 score: 75.6 bits; conditional E-value: 5.7e-25
HHHTT-S-EEESS---TT-EEEEEEEEGGGGGGHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EE CS
TruB_N 1 krllkakkvGhtGtLDplatGvLvvavgeaTklleylleadKeYeatirlgaetdteDaegeileeekveklteekleevlkkftGe 87
+r+lk++k Gh+GtLDp++tG+L+v+v++aT+l+++ ++a KeY++ +rl+ + ++e kl ++++++tG+
tr|H2ZHM3|H2ZHM3_CIOSA 100 RRILKVEKTGHSGTLDPKVTGCLIVCVERATRLVKSQQSAGKEYVCIVRLHSAIENE-----------------LKLARAIETLTGA 169
89************************************************9987654.................368999******* PP
E---------------------------------EEEEEEEEEEEEEE..EEEEEEEESTTTTH CS
TruB_N 88 ieqvppmySAvkvnGkrlyelaregeeverkkrkvtiyelelleveep..evelevecskGtYi 149
+ q+pp +SAvk r+ r tiy+ +lle++e+ + v+c++GtYi
tr|H2ZHM3|H2ZHM3_CIOSA 170 LFQRPPLISAVK-----------------RQLRVRTIYQSKLLEFDEEkrLGVFWVSCEAGTYI 216
************.................999*************988767899*********8 PP
== domain 2 score: -3.0 bits; conditional E-value: 0.94
-EEE-.--TT--HHHH CS
TruB_N 62 eileeekveklteekl 77
+ ek +++++
tr|H2ZHM3|H2ZHM3_CIOSA 469 KKE-----EKAKKKEV 479
111.....11111111 PP
>> tr|H2YML1|H2YML1_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 42.1 0.0 1.2e-14 7.1e-11 13 145 .. 102 237 .. 97 241 .. 0.89
Alignments for each domain:
== domain 1 score: 42.1 bits; conditional E-value: 1.2e-14
S---TT-EEEEEEEEGGG....GGGHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EEE------- CS
TruB_N 13 GtLDplatGvLvvavgea....TklleylleadKeYeatirlgaetdteDaegeileeekveklteekleevlkkftGeieqvppmy 95
LD a Gv v++v+++ Tk +++ +++Y++ ++g ++ t+ + +ile+++++++t +k+++vl++++ + +
tr|H2YML1|H2YML1_CIOSA 102 NLLDADACGVQVIGVDKKgenlTKRYQNM-GLPRKYKVHGQFGFASMTHSPKSRILERSTWDHVTADKISRVLTTIQVSHRNAMLRD 187
569************98521114444443.4569************************99*************************** PP
--------------------------EEEEEEEEEEEEEEEEEEEEEEST CS
TruB_N 96 SAvkvnGkrlyelaregeeverkkrkvtiyelelleveepevelevecsk 145
S ++ +++++y+la +g + i +++l +++ p++ le+ c +
tr|H2YML1|H2YML1_CIOSA 188 SGLELSSHQAYKLASRGLLRPKGGYEPVIVDIKLSSLNLPHFVLEIICIN 237
**********************************************9965 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (149 nodes)
Target sequences: 11592 (4231397 residues searched)
Passed MSV filter: 344 (0.0296756); expected 231.8 (0.02)
Passed bias filter: 249 (0.0214803); expected 231.8 (0.02)
Passed Vit filter: 14 (0.00120773); expected 11.6 (0.001)
Passed Fwd filter: 2 (0.000172533); expected 0.1 (1e-05)
Initial search space (Z): 11592 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.07u 0.00s 00:00:00.07 Elapsed: 00:00:00.04
# Mc/sec: 15761.95
//
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