# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/TruB_N.hmm.txt
# target sequence database:        proteomes/Monosiga_brevicollis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       TruB_N  [M=149]
Accession:   PF01509.17
Description: TruB family pseudouridylate synthase (N terminal domain)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    3.7e-45  153.0   0.0    4.7e-45  152.7   0.0    1.1  1  tr|A9UQA2|A9UQA2_MONBE  Uncharacterized protein (Fragment) OS
    1.1e-24   86.5   0.1    9.4e-22   77.0   0.1    3.4  1  tr|A9UQV1|A9UQV1_MONBE  Uncharacterized protein OS=Monosiga b


Domain annotation for each sequence (and alignments):
>> tr|A9UQA2|A9UQA2_MONBE  Uncharacterized protein (Fragment) OS=Monosiga brevicollis OX=81824 GN=13301 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.7   0.0     1e-48   4.7e-45       6     149 .]       6     149 ..       1     149 [. 0.97

  Alignments for each domain:
  == domain 1  score: 152.7 bits;  conditional E-value: 1e-48
                             -S-EEESS---TT-EEEEEEEEGGGGGGHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EEE---- CS
                  TruB_N   6 akkvGhtGtLDplatGvLvvavgeaTklleylleadKeYeatirlgaetdteDaegeileeekveklteekleevlkkftGeieqvp 92 
                               kvGh+GtLD  a+GvLv++vg aTk l+++l  dK+Ye+ ++lg +t+t D +ge+ +e+  e++t ++l+++l++f G+i+q+p
  tr|A9UQA2|A9UQA2_MONBE   6 KLKVGHGGTLDAEAEGVLVIGVGGATKQLSQFLACDKSYEFDVELGRRTTTLDVDGEVEAEAPFEHVTADMLQAALNEFVGDIMQIP 92 
                             45*********************************************************9989************************ PP

                             -----------------------------EEEEEEEEEEEEEEEEEEEEEESTTTTH CS
                  TruB_N  93 pmySAvkvnGkrlyelaregeeverkkrkvtiyelelleveepevelevecskGtYi 149
                             p ySA++++Gkrl + ar+g+ v+ ++r+v++ + +l ++  p +++ v+c  G+Y+
  tr|A9UQA2|A9UQA2_MONBE  93 PRYSALRIDGKRLSDHARSGTPVDPQPRPVRVLAAQLQAYVAPVATIAVTCGGGFYV 149
                             ********************************************************8 PP

>> tr|A9UQV1|A9UQV1_MONBE  Uncharacterized protein OS=Monosiga brevicollis OX=81824 GN=17370 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.1     2e-25   9.4e-22       1     149 []      93     209 ..      93     209 .. 0.94

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 2e-25
                             HHHTT-S-EEESS---TT-EEEEEEEEGGGGGGHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EE CS
                  TruB_N   1 krllkakkvGhtGtLDplatGvLvvavgeaTklleylleadKeYeatirlgaetdteDaegeileeekveklteekleevlkkftGe 87 
                             +r+l+++k Gh+GtLDp++tG+L+v+v++aT+l+++ ++a KeY+  +rl+ + ++e                 ++l+++l+k+tG+
  tr|A9UQV1|A9UQV1_MONBE  93 RRILRVEKTGHSGTLDPKVTGCLIVCVERATRLVKSQQNAGKEYVSIVRLHSAIEEE-----------------KQLTQALEKLTGA 162
                             89************************************************9987654.................47999******** PP

                             E---------------------------------EEEEEEEEEEEEEE..EEEEEEEESTTTTH CS
                  TruB_N  88 ieqvppmySAvkvnGkrlyelaregeeverkkrkvtiyelelleveep..evelevecskGtYi 149
                             + q+pp +SAvk                 r+ r  tiye +ll+++++     + v+c++GtYi
  tr|A9UQV1|A9UQV1_MONBE 163 LFQRPPLISAVK-----------------RALRVRTIYESKLLDFDKErnLGVFWVKCEAGTYI 209
                             ************.................8999************988767889*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (149 nodes)
Target sequences:                         9188  (5511963 residues searched)
Passed MSV filter:                       256  (0.0278624); expected 183.8 (0.02)
Passed bias filter:                      186  (0.0202438); expected 183.8 (0.02)
Passed Vit filter:                        17  (0.00185024); expected 9.2 (0.001)
Passed Fwd filter:                         2  (0.000217675); expected 0.1 (1e-05)
Initial search space (Z):               9188  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.07u 0.00s 00:00:00.07 Elapsed: 00:00:00.04
# Mc/sec: 20532.06
//
[ok]