# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
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# query HMM file: pfam_list/TruB_N.hmm.txt
# target sequence database: proteomes/Thermococcus_kodakarensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TruB_N [M=149]
Accession: PF01509.17
Description: TruB family pseudouridylate synthase (N terminal domain)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2e-26 90.3 0.2 1.1e-22 78.1 0.2 3.2 1 sp|Q5JJE8|TRUB_THEKO Probable tRNA pseudouridine synthase B
Domain annotation for each sequence (and alignments):
>> sp|Q5JJE8|TRUB_THEKO Probable tRNA pseudouridine synthase B OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 78.1 0.2 4.7e-26 1.1e-22 1 149 [] 67 180 .. 67 180 .. 0.95
Alignments for each domain:
== domain 1 score: 78.1 bits; conditional E-value: 4.7e-26
HHHTT-S-EEESS---TT-EEEEEEEEGGGGGGHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EEE- CS
TruB_N 1 krllkakkvGhtGtLDplatGvLvvavgeaTklleylleadKeYeatirlgaetdteDaegeileeekveklteekleevlkkftGeie 89
kr+l+ +k+Gh+GtLDp+++GvL+va+++aT++++ ll a KeY+a ++l+ + e+k+ +v+++f+Gei
sp|Q5JJE8|TRUB_THEKO 67 KRILNLNKAGHGGTLDPKVSGVLPVALERATRVVQALLPAGKEYVALMHLHGDVP------------------EDKILAVMREFQGEII 137
89***********************************************986544..................346899********** PP
--------------------------------EEEEEEEEEEEEEEEEEEEEEESTTTTH CS
TruB_N 90 qvppmySAvkvnGkrlyelaregeeverkkrkvtiyelelleveepevelevecskGtYi 149
q+pp SAvk r+ r+ ++y +++le+e ++v ++v +++GtYi
sp|Q5JJE8|TRUB_THEKO 138 QRPPLRSAVK-----------------RRLRTRKVYYIDVLEIEGRDVLFRVGVEAGTYI 180
**********.................899*****************************8 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (149 nodes)
Target sequences: 2301 (637680 residues searched)
Passed MSV filter: 81 (0.0352021); expected 46.0 (0.02)
Passed bias filter: 67 (0.0291178); expected 46.0 (0.02)
Passed Vit filter: 5 (0.00217297); expected 2.3 (0.001)
Passed Fwd filter: 1 (0.000434594); expected 0.0 (1e-05)
Initial search space (Z): 2301 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.00
# Mc/sec: inf
//
[ok]