# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/TruB_N.hmm.txt
# target sequence database:        proteomes/Trichoplax_adhaerens.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       TruB_N  [M=149]
Accession:   PF01509.17
Description: TruB family pseudouridylate synthase (N terminal domain)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    4.5e-21   75.2  12.0    6.2e-21   74.7   0.1    4.2  3  tr|B3RLQ9|B3RLQ9_TRIAD  Uncharacterized protein (Fragment) OS


Domain annotation for each sequence (and alignments):
>> tr|B3RLQ9|B3RLQ9_TRIAD  Uncharacterized protein (Fragment) OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_19124 PE=4 
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.1   5.4e-25   6.2e-21       1     149 []      82     198 ..      82     198 .. 0.93
   2 ?   -5.4   6.1         1   1.2e+04      42     116 ..     403     429 ..     369     456 .. 0.53
   3 ?   -6.7   7.6         1   1.2e+04      56      71 ..     417     432 ..     387     477 .. 0.51

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 5.4e-25
                             HHHTT-S-EEESS---TT-EEEEEEEEGGGGGGHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EE CS
                  TruB_N   1 krllkakkvGhtGtLDplatGvLvvavgeaTklleylleadKeYeatirlgaetdteDaegeileeekveklteekleevlkkftGe 87 
                             +r+l+++k Gh+GtLDp++tG+L+v++++aT+l+++ + a KeY+++irl+++ ++e                   l ++l+++tG+
  tr|B3RLQ9|B3RLQ9_TRIAD  82 RRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQGAGKEYVCVIRLHEAIENEA-----------------VLARTLETLTGA 151
                             89*************************************************9877654.................466789****** PP

                             E---------------------------------EEEEEEEEEEEEEE..EEEEEEEESTTTTH CS
                  TruB_N  88 ieqvppmySAvkvnGkrlyelaregeeverkkrkvtiyelelleveep..evelevecskGtYi 149
                             + q+pp +SAvk                 r+ r  tiye +l+e++++     + v+c++GtYi
  tr|B3RLQ9|B3RLQ9_TRIAD 152 LFQRPPLISAVK-----------------RQLRIRTIYESKLIEFDKDrhLGVFWVSCEAGTYI 198
                             ************.................999*************9887677899********8 PP

  == domain 2  score: -5.4 bits;  conditional E-value: 1
                             EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EEE---------------------------- CS
                  TruB_N  42 KeYeatirlgaetdteDaegeileeekveklteekleevlkkftGeieqvppmySAvkvnGkrlyelaregeeve 116
                             K+ +at  +  +t++e +e e  ee+                                                +
  tr|B3RLQ9|B3RLQ9_TRIAD 403 KTPDATSSVLGQTKKEKKEEEKKEEK------------------------------------------------K 429
                             44444444333444444333333331................................................1 PP

  == domain 3  score: -6.7 bits;  conditional E-value: 1
                             TSBTTS-EEE-.--TT CS
                  TruB_N  56 teDaegeileeekvek 71 
                             +e +e e  ee+k +k
  tr|B3RLQ9|B3RLQ9_TRIAD 417 KEKKEEEKKEEKKEKK 432
                             3333333332211111 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (149 nodes)
Target sequences:                        11518  (5222075 residues searched)
Passed MSV filter:                       404  (0.0350755); expected 230.4 (0.02)
Passed bias filter:                      291  (0.0252648); expected 230.4 (0.02)
Passed Vit filter:                        27  (0.00234416); expected 11.5 (0.001)
Passed Fwd filter:                         1  (8.68206e-05); expected 0.1 (1e-05)
Initial search space (Z):              11518  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.08u 0.00s 00:00:00.08 Elapsed: 00:00:00.04
# Mc/sec: 19452.23
//
[ok]