# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TruD.hmm.txt
# target sequence database: proteomes/Dictyostelium_discoideum.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TruD [M=416]
Accession: PF01142.17
Description: tRNA pseudouridine synthase D (TruD)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.4e-75 254.2 0.2 3.4e-71 239.8 0.0 3.6 2 tr|Q86JH5|Q86JH5_DICDI Uncharacterized protein OS=Dictyostel
Domain annotation for each sequence (and alignments):
>> tr|Q86JH5|Q86JH5_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0216877 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.5 0.0 4.3e-05 0.55 2 33 .. 81 112 .. 80 143 .. 0.82
2 ! 239.8 0.0 2.6e-75 3.4e-71 42 416 .] 230 662 .. 215 662 .. 0.90
Alignments for each domain:
== domain 1 score: 8.5 bits; conditional E-value: 4.3e-05
TruD 2 lgielyvtdtegigGrlrespeDFiVeEieef 33
lgi+l++ ++ G l+++ DFiV+Ei e
tr|Q86JH5|Q86JH5_DICDI 81 LGIKLFLGKSGSWSGLLKQRFSDFIVNEIDEQ 112
799999999999*****************655 PP
== domain 2 score: 239.8 bits; conditional E-value: 2.6e-75
TruD 42 geylvlrvekrnwdtldlvrelaralgisrkrvgfaGtKDkrAvTtQlisirkvepeelekl.....ei.kdvelevvgrarrklrl 122
+y+ +++ k+n+dt+d ++ ++r l+ s+k+++faGtKDkr++TtQ +++ kv+pe+l +l ++ + v++ + +++lrl
tr|Q86JH5|Q86JH5_DICDI 230 PKYVEFKLCKENRDTMDTLSMMSRILRNSEKNFSFAGTKDKRGITTQRVTVWKVTPEKLVELnnrisTLsPPVRIGEYRFVENHLRL 316
5789999***************************************************99998866533589*************** PP
TruD 123 GdLaGNkFeirvrdvaeeeeaakraeeileelkekggvPNyfGvQRFGsrrpvthlvGkaivkgdleeAveayvgkpfeeesedtre 209
GdL GN+F i++r+++ ++ + ++e +e+ k++g + NyfG+QRFG+ t+++G a+++g++e+A++ ++ +p + e++d ++
tr|Q86JH5|Q86JH5_DICDI 317 GDLSGNRFSIVIREIQGAD--DQLITESIETFKKTG-FINYFGMQRFGTGAIPTYEIGIAMIQGNWEKAAK-LILDPRDGERDDATK 399
**************94344..478999999999998.********************************86.6789*********** PP
TruD 210 areavaetgdleealeelpkslryEramlkrLaekpkdykkAlealpknLqrlFvhAyqSylFNrvlseRlerglpldepveGDvvi 296
ar +++etgd+++ l lp+ l+ Er++l L++ + +y+ A+ ++p++L++l+ h+yqS ++N + +R+e +++p+ GD+vi
tr|Q86JH5|Q86JH5_DICDI 400 ARLYYKETGDIKKTLTMLPRGLNAERKLLLGLKNGQSSYQDAFYSIPRTLRMLYTHSYQSLIWNLMATKRIELF-GFNKPIVGDLVI 485
************************************************************************77.9*********** PP
TruD 297 faeer.............................lpdtdrlqlvteknveevkrliergr.afvtaplvGtetelaegevgeierev 353
+ee+ +++++ +v+ + ++vk+ +r + +v++pl+G +t l++ ge+ e
tr|Q86JH5|Q86JH5_DICDI 486 ISEESidnkkneeeskdnnnnsndgeeeiggdetEIEEKKVIKVDYVTEDDVKN--DRYTiQQVVLPLIGGSTILPKNIIGELYVEE 570
**99999*****************999998886645555555555555555553..3333146899********************* PP
TruD 354 leeegleledFklpklpelsskGtrRaillrve...............................dlelsaeedeltleFsLpkGsYA 409
l+++++++++F ++ ++ +G +R++l + + d+ + +++ + + F Lp+ +YA
tr|Q86JH5|Q86JH5_DICDI 571 LAKSNIQPSQFISKN-RAIDLRGGYRKLLETAKdttykifnyddftiplalsdieilkgsqepvDVP-NGKHKAVRVCFNLPSSTYA 655
***********9766.89**********9999999**********************9998854322.344556************* PP
TruD 410 TvvlrEi 416
T+ rEi
tr|Q86JH5|Q86JH5_DICDI 656 TMAYREI 662
*****97 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (416 nodes)
Target sequences: 12739 (6856946 residues searched)
Passed MSV filter: 599 (0.047021); expected 254.8 (0.02)
Passed bias filter: 164 (0.0128739); expected 254.8 (0.02)
Passed Vit filter: 11 (0.00086349); expected 12.7 (0.001)
Passed Fwd filter: 1 (7.84991e-05); expected 0.1 (1e-05)
Initial search space (Z): 12739 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.17u 0.01s 00:00:00.18 Elapsed: 00:00:00.07
# Mc/sec: 40749.85
//
[ok]