# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TruD.hmm.txt
# target sequence database: proteomes/Drosophila_melanogaster.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TruD [M=416]
Accession: PF01142.17
Description: tRNA pseudouridine synthase D (TruD)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.6e-73 245.0 0.2 7.8e-68 228.8 0.1 3.7 2 tr|Q9VSK9|Q9VSK9_DROME GH24787p OS=Drosophila melanogaster O
Domain annotation for each sequence (and alignments):
>> tr|Q9VSK9|Q9VSK9_DROME GH24787p OS=Drosophila melanogaster OX=7227 GN=Dmel\CG6745 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 7.5 0.0 8.8e-05 1.2 10 34 .. 62 88 .. 52 115 .. 0.70
2 ! 228.8 0.1 5.6e-72 7.8e-68 42 416 .] 235 673 .. 212 673 .. 0.91
Alignments for each domain:
== domain 1 score: 7.5 bits; conditional E-value: 8.8e-05
TruD 10 dtegigGrlrespeDFiVeEieef..s 34
+++g+ G l+++ DF V+Ei +
tr|Q9VSK9|Q9VSK9_DROME 62 EAPGFTGILKSRFSDFHVNEIDSNgkV 88
689******************655432 PP
== domain 2 score: 228.8 bits; conditional E-value: 5.6e-72
TruD 42 geylvlrvekrnwdtldlvrelaralgisrkrvgfaGtKDkrAvTtQlisirkvepeelekl..eikdvelevvgrarrklrlGdLa 126
+y+ + v+k+n t d++++la +l++ ++v+++G+KDkrA TtQ +s+++ +pe++ + + ++v++ ++g +++ l+lGdL+
tr|Q9VSK9|Q9VSK9_DROME 235 ADYVTFLVHKTNLVTSDVASTLAARLNLRPSQVNYSGIKDKRAKTTQKFSVKRRTPESILVAarSQRNVHIGNFGFESNTLKLGDLQ 321
68999**********************************************999999965444477********************* PP
TruD 127 GNkFeirvrdvaeeeeaakraeeileelkekggvPNyfGvQRFGsrrpv.thlvGkaivkgdleeAveayvgkpfeeesedtreare 212
GN+F+i +r +a +e+++++e+ l++lke+g + Ny+G+QRFG+ +v t++vG a++k d++ A e ++ kp +++ e r +re
tr|Q9VSK9|Q9VSK9_DROME 322 GNRFRIALRHIA--KEKREEIEQALQSLKERG-FINYYGLQRFGNSASVpTYEVGVALLKHDYKLACE-LILKPRDSDVEFLRPIRE 404
**********93..45678***********99.***********8876659*************9986.6789************** PP
TruD 213 avaetgdleealeelpkslryEramlkrLae.kpkdykkAlealpknLqrlFvhAyqSylFNrvlseRlerglpldepveGDvvifa 298
++++d ++a ++ + +E+++l+ La+ + dy++Al+++p+n+ +l+ hAyqS +FNr+ s+R+++ + ++GD+v+ +
tr|Q9VSK9|Q9VSK9_DROME 405 EWWKNRDSAAAAAQIYGEKFIEKKLLDGLARfGESDYSSALRQIPRNMLMLYPHAYQSLIFNRIASRRIKEF-G-LKLIPGDLVYVE 489
*******************************8899***********************************98.4.489********* PP
TruD 299 eer................................lpdtdrlqlvteknveevkrliergr...afvtaplvGtetelaegevgeie 350
+++ ++ +++++k ++ i +g+ + v++pl+G + + ++ e g+
tr|Q9VSK9|Q9VSK9_DROME 490 QDQseaseeqaqqgealeeqkeeepndeplevpegDEAIEEESIFKRKVRPLTAEDIASGKyklCDVVLPLPGHDITYPSNECGAWY 576
9999*************************99777644445555666666666666776665333789******************** PP
TruD 351 revleeegleledFklpklpelsskGtrRaillrve................................dlelsaeedeltleFsLpk 405
+e+l+e gl+ ++ k ++ + + +G++R+++++ + +e++a+ l+leFsLp
tr|Q9VSK9|Q9VSK9_DROME 577 EEMLAEVGLSSDQLKHKE-KTYALAGAYRKMIISSSdlkwsfrmyntpedtliasdwellknipvapePAEAEANYMALLLEFSLPT 662
***************887.8999***********999****************************9985566777788********* PP
TruD 406 GsYATvvlrEi 416
YAT++lrE+
tr|Q9VSK9|Q9VSK9_DROME 663 AAYATMFLREL 673
*********96 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (416 nodes)
Target sequences: 13786 (7394964 residues searched)
Passed MSV filter: 538 (0.0390251); expected 275.7 (0.02)
Passed bias filter: 269 (0.0195125); expected 275.7 (0.02)
Passed Vit filter: 23 (0.00166836); expected 13.8 (0.001)
Passed Fwd filter: 1 (7.25374e-05); expected 0.1 (1e-05)
Initial search space (Z): 13786 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.21u 0.01s 00:00:00.22 Elapsed: 00:00:00.08
# Mc/sec: 38453.81
//
[ok]