# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TruD.hmm.txt
# target sequence database: proteomes/Monosiga_brevicollis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TruD [M=416]
Accession: PF01142.17
Description: tRNA pseudouridine synthase D (TruD)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.8e-48 162.5 0.0 9.8e-46 155.4 0.0 2.3 2 tr|A9UPS5|A9UPS5_MONBE Uncharacterized protein OS=Monosiga b
2.2e-37 127.9 0.0 7.8e-34 116.2 0.0 2.1 2 tr|A9V8U0|A9V8U0_MONBE Predicted protein (Fragment) OS=Monos
8.3e-07 27.2 0.0 1.2e-06 26.6 0.0 1.3 1 tr|A9V8U1|A9V8U1_MONBE Predicted protein OS=Monosiga brevico
Domain annotation for each sequence (and alignments):
>> tr|A9UPS5|A9UPS5_MONBE Uncharacterized protein OS=Monosiga brevicollis OX=81824 GN=30860 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 4.5 0.0 0.0021 6.5 13 33 .. 30 50 .. 24 76 .. 0.80
2 ! 155.4 0.0 3.2e-49 9.8e-46 43 283 .. 274 523 .. 251 529 .. 0.87
Alignments for each domain:
== domain 1 score: 4.5 bits; conditional E-value: 0.0021
TruD 13 gigGrlrespeDFiVeEieef 33
+ G+l+++p DF+V+E+ +
tr|A9UPS5|A9UPS5_MONBE 30 RFSGTLKTEPADFVVDEVDLA 50
578**************9544 PP
== domain 2 score: 155.4 bits; conditional E-value: 3.2e-49
TruD 43 eylvlrvekrnwdtldlvrelaralgisrkrvgfaGtKDkrAvTtQlisirkvepeelekl..eikdvelev..vgrarrklrlGdL 125
+++ + ++k++ +t ++++e+a+ + i + vg aGtKDkrA+TtQl+++r+v+p+++ + +++d+++e + ar++l+lG+L
tr|A9UPS5|A9UPS5_MONBE 274 SVTAVVMRKQGLETSHFLEEIANLFAIRTSHVGVAGTKDKRAITTQLLTLRGVTPAQVLQQqqALSDLQIELggAWLAREQLTLGQL 360
45778899*************************************************977766677766665116789********* PP
TruD 126 aGNkFeirvrdvaeeeeaakraeeileelkekggvPNyfGvQRFGsrrpvt..hlvGkaivkgdleeAveayvgkpfeeesedtrea 210
+GN+F+i +rdv+ + ++ +++ l+ l+++g + N++G+QRFGs ++ h vG+ i+++++ eAv+ ++ ++s + +a
tr|A9UPS5|A9UPS5_MONBE 361 YGNRFKILIRDVT---HSRSVVDHALSFLRDNG-FVNFYGTQRFGSADSTAgpHQVGRLILQRKYLEAVRLWMAPDPADRSMASSRA 443
***********84...3356999*******998.************8776455*********************999999999999* PP
TruD 211 reav....aetgdleealeelpkslryEramlkrLae...kpkdykkAlealpknLqrlFvhAyqSylFNrvlseRlerg 283
r+ + + + l++al +p+s +l+ L++ +++ +Al+ lp + + + vhAy Syl+N++ +R+er+
tr|A9UPS5|A9UPS5_MONBE 444 RQRLvsfpWSRSQLDQALAMMPRSRVQVIRILQGLRRfgvSDEGALQALKGLPFTQRLFPVHAYTSYLWNQLAYQRVERY 523
*999888889**************99999999***9977777777788888888866666*****************985 PP
>> tr|A9V8U0|A9V8U0_MONBE Predicted protein (Fragment) OS=Monosiga brevicollis OX=81824 GN=38570 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.8 0.0 5.2e-05 0.16 3 33 .. 56 87 .. 54 104 .. 0.77
2 ! 116.2 0.0 2.6e-37 7.8e-34 37 196 .. 224 394 .. 215 395 .] 0.88
Alignments for each domain:
== domain 1 score: 9.8 bits; conditional E-value: 5.2e-05
TruD 3 gielyv.tdtegigGrlrespeDFiVeEieef 33
gi+ +v d+eg+ +++++ DF+V+Ei +
tr|A9V8U0|A9V8U0_MONBE 56 GIDAFVcPDQEGFHAVIKQRYSDFLVNEIDQN 87
6666551599*******************554 PP
== domain 2 score: 116.2 bits; conditional E-value: 2.6e-37
TruD 37 eeakegeylvlrvekrnwdtldlvrelaralgisrkrvgfaGtKDkrAvTtQlisirkvepeelekl.............ei..kdv 108
++++ +y+ +++ k n +t + + +lara +i+ +r++faGtKD+rA+T+Q i+ ++ + +++ + ++
tr|A9V8U0|A9V8U0_MONBE 224 RHHTTAPYTHFTMVKVNQETVQCLTQLARAGKIKDSRLSFAGTKDRRAITVQRIAAERTPAIRIKGGadrssadhitpppPLlgTGI 310
4677899************************************************8777776766656777777556666225699* PP
TruD 109 elevvgrarrklrlGdLaGNkFeirvrdvaeeeeaakraeeileelkekggvPNyfGvQRFGsrrpvthlvGkaivkgdleeAveay 195
e+ ++ a+ l+lG+L+GN+F+i++r+v ++ + +++ l++l+e+g + NyfG+QRFG+ +h vG a+++gd+ +A+e +
tr|A9V8U0|A9V8U0_MONBE 311 EVGDFADAKDGLSLGNLWGNRFRIVLRNVDGSP---ELMTKRLQSLREQG-FINYFGLQRFGTYSVPSHAVGVAVLQGDYAAAIELL 393
****************************84344...5999********99.********************************9987 PP
TruD 196 v 196
+
tr|A9V8U0|A9V8U0_MONBE 394 L 394
6 PP
>> tr|A9V8U1|A9V8U1_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=35277 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.6 0.0 4e-10 1.2e-06 254 302 .. 2 50 .. 1 121 [. 0.68
Alignments for each domain:
== domain 1 score: 26.6 bits; conditional E-value: 4e-10
TruD 254 alpknLqrlFvhAyqSylFNrvlseRlerglpldepveGDvvifaeer..l 302
++pk+ + l++hA+qSy++Nrv s R er +++v+GD+v + +
tr|A9V8U1|A9V8U1_MONBE 2 RMPKHSKTLYLHAVQSYIWNRVASYRYERF--GRKAVAGDLVHAPAAAvgA 50
589999***********************9..579*******987666442 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (416 nodes)
Target sequences: 9188 (5511963 residues searched)
Passed MSV filter: 334 (0.0363518); expected 183.8 (0.02)
Passed bias filter: 163 (0.0177405); expected 183.8 (0.02)
Passed Vit filter: 15 (0.00163256); expected 9.2 (0.001)
Passed Fwd filter: 3 (0.000326513); expected 0.1 (1e-05)
Initial search space (Z): 9188 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.16u 0.01s 00:00:00.17 Elapsed: 00:00:00.05
# Mc/sec: 45859.53
//
[ok]