# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TruD.hmm.txt
# target sequence database: proteomes/Natronomonas_moolapensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TruD [M=416]
Accession: PF01142.17
Description: tRNA pseudouridine synthase D (TruD)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.1e-152 503.0 0.0 1e-151 502.8 0.0 1.0 1 tr|M1XPT8|M1XPT8_NATM8 Probable tRNA pseudouridine synthase
Domain annotation for each sequence (and alignments):
>> tr|M1XPT8|M1XPT8_NATM8 Probable tRNA pseudouridine synthase D OS=Natronomonas moolapensis (strain DSM 18674 / JCM 14
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 502.8 0.0 3.8e-155 1e-151 2 416 .] 11 436 .. 10 436 .. 0.97
Alignments for each domain:
== domain 1 score: 502.8 bits; conditional E-value: 3.8e-155
TruD 2 lgielyvtdtegigGrlrespeDFiVeEieef..sge.eeakegey..lvlrvekrnwdtldlvrelaralgisrkrvgfaGtKDkr 83
+gi++yv++t+g+gG+lr++peDF+VeE e+f + + ++a+ g+y lv+r+++r+wdt+d++++l+++lg+sr+rv++aGtKDk+
tr|M1XPT8|M1XPT8_NATM8 11 VGIKYYVSETDGTGGHLRDRPEDFRVEEREAFgaDLRgVDADVGSYphLVFRATLRGWDTNDFASTLSKRLGVSRERVSWAGTKDKH 97
8*******************************8766667999999999*************************************** PP
TruD 84 AvTtQlisirkvepeelekleikdvelevvgrarrklrlGdLaGNkFeirvrdvaeeeeaakraeeileelkekg............ 158
AvTtQl+si++ + +el+ +++++++e +gra+r++ +GdLaGN+Fe++vr+ ae++e +a+ i+ el ++g
tr|M1XPT8|M1XPT8_NATM8 98 AVTTQLFSIKHPD-DELP--SVDGATIEPLGRAGRPVLFGDLAGNDFEVVVRG-AERPE---NADPIAVELGRFGadgrsadedgdg 177
**********988.5788..89*******************************.66676...9***********9************ PP
TruD 159 ..gvPNyfGvQRFGsrrpvthlvGkaivkgdleeAveayvgkpfeeesedtreareavaetgdleealeelpkslryEramlkrLae 243
+vPNyfG+QRFGs+rp+th vG +v+g++e+A+ +yv++++++e+++tr+ar+ + e++++e+a e lp lr+Era+ rLae
tr|M1XPT8|M1XPT8_NATM8 178 avAVPNYFGQQRFGSMRPITHRVGLDVVRGEWESAAVRYVCESSDREPDRTRTARQRLDEEREWERANEVLPGGLRFERAIAGRLAE 264
*99************************************************************************************ PP
TruD 244 ...kpkdykkAlealpknLqrlFvhAyqSylFNrvlseRlerglpldepveGDvvifaeer.lpdtdrlqlvteknveevkrlierg 326
p dy++Ale+lp+nLq++F +A+qSy+FNrvlseRl+rglp+ +p GDvv+fa+ + lpd+dr+q+v+++++ +++r++erg
tr|M1XPT8|M1XPT8_NATM8 265 gadGPADYREALETLPRNLQSMFTNAAQSYVFNRVLSERLRRGLPFGTPAVGDVVCFADGDgLPDPDRTQAVEAEQLGTIRRHCERG 351
99999*****************************************************9889************************* PP
TruD 327 rafvtaplvGtetelaegevgeierevleeegleledFklpklpelsskGtrRaillrvedlelsaeedeltleFsLpkGsYATvvl 413
rafvtaplvGtet+++ ge+gei revl++ +l++ dF+ p+ ++s+GtrRa+l+r++ ++e+d+ltl+FsLpkGsYATv+
tr|M1XPT8|M1XPT8_NATM8 352 RAFVTAPLVGTETDFGFGEPGEIVREVLDDLDLQRGDFDRPG--AFGSEGTRRAVLFRTDL---EHESDPLTLRFSLPKGSYATVLA 433
******************************************..***************95...346899***************** PP
TruD 414 rEi 416
rE+
tr|M1XPT8|M1XPT8_NATM8 434 REF 436
**7 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (416 nodes)
Target sequences: 2723 (809592 residues searched)
Passed MSV filter: 76 (0.0279104); expected 54.5 (0.02)
Passed bias filter: 51 (0.0187293); expected 54.5 (0.02)
Passed Vit filter: 3 (0.00110173); expected 2.7 (0.001)
Passed Fwd filter: 1 (0.000367242); expected 0.0 (1e-05)
Initial search space (Z): 2723 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02
# Mc/sec: 16839.51
//
[ok]