# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TruD.hmm.txt
# target sequence database: proteomes/Ornithorhynchus_anatinus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TruD [M=416]
Accession: PF01142.17
Description: tRNA pseudouridine synthase D (TruD)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.4e-71 239.6 0.0 1.7e-65 221.7 0.0 2.3 2 tr|F6ZPP1|F6ZPP1_ORNAN Pseudouridylate synthase 7 OS=Ornitho
4.4e-21 75.4 0.1 4.6e-21 75.4 0.1 1.0 1 tr|K7E6L7|K7E6L7_ORNAN Uncharacterized protein OS=Ornithorhy
4.1e-20 72.3 0.0 4.6e-20 72.1 0.0 1.0 1 tr|F6Z4V5|F6Z4V5_ORNAN Uncharacterized protein OS=Ornithorhy
Domain annotation for each sequence (and alignments):
>> tr|F6ZPP1|F6ZPP1_ORNAN Pseudouridylate synthase 7 OS=Ornithorhynchus anatinus OX=9258 GN=PUS7 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.6 0.0 8.9e-07 0.0064 2 33 .. 122 153 .. 121 203 .. 0.87
2 ! 221.7 0.0 2.4e-69 1.7e-65 39 416 .] 266 656 .. 253 656 .. 0.93
Alignments for each domain:
== domain 1 score: 15.6 bits; conditional E-value: 8.9e-07
TruD 2 lgielyvtdtegigGrlrespeDFiVeEieef 33
+gi +v++++g+ G l+e++ DF+V+Ei +
tr|F6ZPP1|F6ZPP1_ORNAN 122 VGITKFVSKHQGFSGILKERYSDFVVHEIGKD 153
89***************************554 PP
== domain 2 score: 221.7 bits; conditional E-value: 2.4e-69
TruD 39 akegeylvlrvekrnwdtldlvrelaralgisrkrvgfaGtKDkrAvTtQlisirkvepeelekl..eikdvelevvgrarrklrlG 123
+++g+y+ + + k+n dt+d+++ l++ l++ + ++++GtKDkrA+T+Q i++ k+++++l++l + + +l ++ ++ +l+lG
tr|F6ZPP1|F6ZPP1_ORNAN 266 KSRGSYCHFVLYKENKDTMDAINVLSKFLRVTPNIFSYMGTKDKRAITVQEIAVLKITAQRLAHLnkCLMNFKLGNFSYQKSPLKLG 352
678***********************************************************9996668****************** PP
TruD 124 dLaGNkFeirvrdvaeeeeaakraeeileelkekggvPNyfGvQRFGsrrpvthlvGkaivkgdleeAveayvgkpfeeesedtrea 210
+L+GN+F++++r+++ + ++++ + +l+e g + NyfG+QRFG++ t+ vG+ai+++ + e ++ ++ +e+ +
tr|F6ZPP1|F6ZPP1_ORNAN 353 ELQGNHFTVVLRNITGT---DGQVQQAMTSLREIG-FINYFGMQRFGTTAVPTYQVGRAILQNCWTEVMDLILKPRPGAEKGYLVKC 435
*************9433...469**********99.*******************************8888888888899999**** PP
TruD 211 reavaetgdleealeelpkslryEramlkrLae.kpkdykkAlealpknLqrlFvhAyqSylFNrvlseRlerglpldepveGDvvi 296
re a+t+d ++al++lp + +E ++l+ L + k++ +A+ +p+n + +++h+yqSy++N+++s+R+e++ +pv+GD+v+
tr|F6ZPP1|F6ZPP1_ORNAN 436 REEWAKTKDPAAALKKLPVKRCVEGQLLRGLSKyGLKNVVSAFGIIPRNNRLMYIHSYQSYVWNNMVSKRIEEY-G-LQPVPGDLVL 520
*********************************66799**********************************99.4.48*******9 PP
TruD 297 faeerlpdtdrlqlvteknveevkrliergrafvtaplvGtetelaegevgeierevleeegleledFklpklpelsskGtrRaill 383
+ + ++e v++++ v++pl+G+++ ++ + +e +e+l+ + l+ ++ + +k+ + s +G++R+i++
tr|F6ZPP1|F6ZPP1_ORNAN 521 KGATA-------IHIEEGDVDSYS------IHDVVMPLPGFDVIYPKHKISEAYKEMLAADSLDIDNMR-HKIRDYSLSGAYRKIII 593
99555.......888888888888......45799*********************************9.5689************* PP
TruD 384 rve..............................dlelsaeedeltleFsLpkGsYATvvlrEi 416
r++ ++++ + + l++eFsLp+ +YAT+ +rE+
tr|F6ZPP1|F6ZPP1_ORNAN 594 RPQnvsweviayddpriplfntdvdnlegkpppVFATEGKYRALKMEFSLPPSTYATMAIREV 656
****************************999986666777788******************96 PP
>> tr|K7E6L7|K7E6L7_ORNAN Uncharacterized protein OS=Ornithorhynchus anatinus OX=9258 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 75.4 0.1 6.3e-25 4.6e-21 92 201 .. 3 121 .. 1 137 [] 0.75
Alignments for each domain:
== domain 1 score: 75.4 bits; conditional E-value: 6.3e-25
TruD 92 irkvepeelekl....eikdvelevvgrarrklrlGdLaGNkFeirvrdv.aeee....eaakraeeileelkekggvPNyfGvQRF 169
++kv pe+l+++ e k++++ ++++ +++lrlG+L+GN+F+i+vrd+ +++ + ++++ e +e++k++g + Ny+G QRF
tr|K7E6L7|K7E6L7_ORNAN 3 VKKVAPERLKEIrsavEKKGISIYNIHSVHQPLRLGQLTGNHFDITVRDLkRQTSdssaKPKESIVEAIENVKTRG-FINYYGPQRF 88
6788899998886655669******************************954333444433445555555556555.********** PP
TruD 170 Gsrrpv.thlvGkaivkgdleeAveayvgkpfe 201
G+ ++v t +G a++++++ +Av+ +++
tr|K7E6L7|K7E6L7_ORNAN 89 GQWQSVqTDQIGLALLNNEMVKAVKLFFTPEDL 121
**99764899***************99875443 PP
>> tr|F6Z4V5|F6Z4V5_ORNAN Uncharacterized protein OS=Ornithorhynchus anatinus OX=9258 GN=PUS7L PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 72.1 0.0 6.3e-24 4.6e-20 243 416 .] 8 197 .. 1 197 [. 0.83
Alignments for each domain:
== domain 1 score: 72.1 bits; conditional E-value: 6.3e-24
TruD 243 e...kpkdykkAlealpknLqrlFvhAyqSylFNrvlseRlerglpldepveGDvvifaeer...lpdtdrlqlvteknveevkrli 323
+ +++ + ++p+ ++ ++vhAy S ++N++ s Rle + ++veGD+v +e+ lp +dr++++++++ ++
tr|F6Z4V5|F6Z4V5_ORNAN 8 RygvTEEGCTRGWLSIPHSMRIFYVHAYCSKIWNEAASFRLETYG--SKVVEGDLVSSEEKGrehLPLSDRVHVISAEEEAANVY-- 90
444466677788889***************************995..69********9988877777777777776554433332.. PP
TruD 324 ergrafvtaplvGtetelaegevgeierevleeegleledFklpklpelsskGtrRaillrve................dlelsaee 394
+v++p+vG + ++ +vg+ re l ++gl++ F++++ +l+ G +R+il ++ +++ls+e
tr|F6Z4V5|F6Z4V5_ORNAN 91 --AIHQVVLPMVGHSIVYPKNKVGQWYRERLGRDGLQTCRFRVSA-LQLNIPGCYRQILKYPRnvsyhlpedgdvdgrmEASLSDEP 174
..334799**********************************998.99**********99999999*********996644444444 PP
TruD 395 de.ltleFsLpkGsYATvvlrEi 416
+ l ++F L+ +YATv lrEi
tr|F6Z4V5|F6Z4V5_ORNAN 175 SAsLHISFDLDASCYATVCLREI 197
3369******************7 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (416 nodes)
Target sequences: 21677 (8259262 residues searched)
Passed MSV filter: 725 (0.0334456); expected 433.5 (0.02)
Passed bias filter: 378 (0.0174378); expected 433.5 (0.02)
Passed Vit filter: 23 (0.00106103); expected 21.7 (0.001)
Passed Fwd filter: 3 (0.000138396); expected 0.2 (1e-05)
Initial search space (Z): 21677 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.22u 0.01s 00:00:00.23 Elapsed: 00:00:00.09
# Mc/sec: 38176.14
//
[ok]