# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TruD.hmm.txt
# target sequence database: proteomes/Pan_troglodytes.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TruD [M=416]
Accession: PF01142.17
Description: tRNA pseudouridine synthase D (TruD)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.1e-74 249.9 0.0 6.3e-70 236.4 0.0 2.1 2 tr|H2R7C1|H2R7C1_PANTR Pseudouridylate synthase 7 like
8.9e-74 249.1 0.0 2.3e-68 231.3 0.0 2.3 2 tr|A0A2I3SFI8|A0A2I3SFI8_PANTR Uncharacterized protein OS=Pan t
Domain annotation for each sequence (and alignments):
>> tr|H2R7C1|H2R7C1_PANTR Pseudouridylate synthase 7 like OS=Pan troglodytes OX=9598 GN=PUS7L PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.3 0.0 1.2e-05 0.14 6 36 .. 153 182 .. 149 213 .. 0.74
2 ! 236.4 0.0 5.5e-74 6.3e-70 40 416 .] 434 834 .. 423 834 .. 0.86
Alignments for each domain:
== domain 1 score: 11.3 bits; conditional E-value: 1.2e-05
TruD 6 lyvtdtegigGrlrespeDFiVeEieefsge 36
+++ d+ g+ G++++sp DFiV Ei e g+
tr|H2R7C1|H2R7C1_PANTR 153 CFFNDHVGFHGTIKSSPSDFIVIEIDEQ-GQ 182
6778999******************655.22 PP
== domain 2 score: 236.4 bits; conditional E-value: 5.5e-74
TruD 40 kegey..lvlrvekrnwdtldlvrelaralgisrkrvgfaGtKDkrAvTtQlisirkvepeelekl..ei..kdvelevvgrarrkl 120
+eg++ + ++++k+n ++ +++ la +lg+ +++++aG+KDk+A+T+Q + +rkv+pe+l+++ ei k++++ ++ + + +l
tr|H2R7C1|H2R7C1_PANTR 434 QEGKViyTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNIekEIekKRMNVFNIRSVDDSL 520
45665448899*****************************************************9988444488999999******* PP
TruD 121 rlGdLaGNkFeirvrdv.aeee...eaakraeeileelkekggvPNyfGvQRFGsrrpv.thlvGkaivkgdleeAveayvgkpfee 202
rlG+L+GN+F+i++r++ ++ + ++++r+ e +e++k+kg + Ny+G QRFG+ r v t +G a++k+++ +A++ +++
tr|H2R7C1|H2R7C1_PANTR 521 RLGQLKGNHFDIVIRNLkKQINdsaNLRERIMEAIENVKKKG-FVNYYGPQRFGKGRKVhTDQIGLALLKNEMMKAIKLFLTPED-- 604
****************85544444455566666666777766.************8875489******************98765.. PP
TruD 203 esedtreareavaetgdleealeelpkslryEramlkrLae...kpkdykkAlealpknLqrlFvhAyqSylFNrvlseRlerglpl 286
++ +++a++++ +t+d++ l+++p+ Era+l++L + +++ +A +lp+ ++ ++vhAy S ++N+++s Rle +
tr|H2R7C1|H2R7C1_PANTR 605 LDDPVNRAKKYFLQTEDAKGTLSLMPEFKVRERALLEALHRfgmTEEGCIQAWFSLPHSMRIFYVHAYTSKIWNEAVSYRLETY--G 689
45556799*********************************88888889999999***************************99..5 PP
TruD 287 depveGDvvifaeer...lpdtdrlqlvteknveevkrliergrafvtaplvGtetelaegevgeierevleeegleledFklpklp 370
++v+GD+v+ +e+ + +++++lvte++ + +v++p++G++ + ++ +vg+ +++l+++gl++ Fk+p+
tr|H2R7C1|H2R7C1_PANTR 690 ARVVQGDLVCLDEDIddeNFPNSKIHLVTEEEGSANMYA----IHQVVLPILGYNIQYPKNKVGQWYHDILSRDGLQTCRFKVPT-L 771
7**********9877666666777888877665544433....34799************************************8.9 PP
TruD 371 elsskGtrRaillrve.................dlelsaeede...ltleFsLpkGsYATvvlrEi 416
+l++ G +R+il +++ ++ + + l+++F L+ +YATv l+Ei
tr|H2R7C1|H2R7C1_PANTR 772 KLNVPGCYRQILKHPRnlsyqlmedhdidvktkGSHIGE---TalsLLISFDLDASCYATVCLKEI 834
*************9999999999*997766443223333...145599****************97 PP
>> tr|A0A2I3SFI8|A0A2I3SFI8_PANTR Uncharacterized protein OS=Pan troglodytes OX=9598 GN=PUS7 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.6 0.0 6.1e-07 0.007 2 32 .. 114 144 .. 113 194 .. 0.87
2 ! 231.3 0.0 2e-72 2.3e-68 39 416 .] 258 648 .. 245 648 .. 0.93
Alignments for each domain:
== domain 1 score: 15.6 bits; conditional E-value: 6.1e-07
TruD 2 lgielyvtdtegigGrlrespeDFiVeEiee 32
+gi +v++++g+ G l+e++ DF+V+Ei +
tr|A0A2I3SFI8|A0A2I3SFI8_PANTR 114 VGITKFVSSHQGFSGILKERYSDFVVHEIGK 144
89***************************54 PP
== domain 2 score: 231.3 bits; conditional E-value: 2e-72
TruD 39 akegeylvlrvekrnwdtldlvrelaralgisrkrvgfaGtKDkrAvTtQlisirkvepeelekl..eikdvelevvgr 115
+++g+y+ + + k+n dt+d+++ l++ l+++ + ++++GtKDkrA+T+Q i++ k+++++l++l + + +l ++
tr|A0A2I3SFI8|A0A2I3SFI8_PANTR 258 KSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKITAQRLAHLnkCLMNFKLGNFSY 336
678***********************************************************9996668********** PP
TruD 116 arrklrlGdLaGNkFeirvrdvaeeeeaakraeeileelkekggvPNyfGvQRFGsrrpvthlvGkaivkgdleeAvea 194
++++l+lG+L+GN+F++++r+++ ++ +++++ +++lke g + Ny+G+QRFG++ t+ vG+ai+++ + e ++
tr|A0A2I3SFI8|A0A2I3SFI8_PANTR 337 QKNPLKLGELQGNHFTVVLRNITGTD---DQVQQAMNSLKEIG-FINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDL 411
*********************95444...59**********99.*******************************9999 PP
TruD 195 yvgkpfeeesedtreareavaetgdleealeelpkslryEramlkrLae.kpkdykkAlealpknLqrlFvhAyqSylF 272
++ + +e+ + re a+t+d ++al++lp + +E ++l+ L + k++ +A+ +p+n + +++h+yqSy++
tr|A0A2I3SFI8|A0A2I3SFI8_PANTR 412 ILKPRSGAEKGYLVKCREEWAKTKDPTAALRKLPVKRCVEGQLLRGLSKyGMKNIVSAFGIIPRNNRLMYIHSYQSYVW 490
9999999******************************************77899************************* PP
TruD 273 NrvlseRlerglpldepveGDvvifaeerlpdtdrlqlvteknveevkrliergrafvtaplvGtetelaegevgeier 351
N+++s+R+e++ +pv+GD+v++ + ++e+ v++++ v++pl+G+++ ++ + +e r
tr|A0A2I3SFI8|A0A2I3SFI8_PANTR 491 NNMVSKRIEDY-G-LKPVPGDLVLKGATA-------TYIEEDDVNNYS------IHDVVMPLPGFDVIYPKHKIQEAYR 554
*********99.4.48*******999554.......667776666666......45799******************** PP
TruD 352 evleeegleledFklpklpelsskGtrRaillrve..............................dlelsaeedeltle 400
e+l ++l+ ++ + +k+ + s +G++R+i++r++ ++ + + + l+++
tr|A0A2I3SFI8|A0A2I3SFI8_PANTR 555 EMLTADNLDIDNMR-HKIRDYSLSGAYRKIIIRPQnvswevvayddpkiplfntdvdnlegktppVFASEGKYRALKMD 632
*************9.5689****************************************9999875666666777**** PP
TruD 401 FsLpkGsYATvvlrEi 416
FsLp+ +YAT+ +rE+
tr|A0A2I3SFI8|A0A2I3SFI8_PANTR 633 FSLPPSTYATMAIREV 648
**************96 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (416 nodes)
Target sequences: 23008 (11942255 residues searched)
Passed MSV filter: 838 (0.0364221); expected 460.2 (0.02)
Passed bias filter: 389 (0.0169072); expected 460.2 (0.02)
Passed Vit filter: 39 (0.00169506); expected 23.0 (0.001)
Passed Fwd filter: 2 (8.69263e-05); expected 0.2 (1e-05)
Initial search space (Z): 23008 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.32u 0.02s 00:00:00.34 Elapsed: 00:00:00.12
# Mc/sec: 41399.82
//
[ok]