# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/TruD.hmm.txt
# target sequence database: proteomes/Saccharomyces_cerevisiae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: TruD [M=416]
Accession: PF01142.17
Description: tRNA pseudouridine synthase D (TruD)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8e-76 254.0 0.7 7.2e-71 237.6 0.3 3.2 2 sp|Q08647|PUS7_YEAST Multisubstrate pseudouridine synthase 7
Domain annotation for each sequence (and alignments):
>> sp|Q08647|PUS7_YEAST Multisubstrate pseudouridine synthase 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.4 0.0 1.1e-05 0.068 3 33 .. 44 75 .. 42 89 .. 0.76
2 ! 237.6 0.3 1.2e-74 7.2e-71 42 416 .] 217 658 .. 194 658 .. 0.87
Alignments for each domain:
== domain 1 score: 10.4 bits; conditional E-value: 1.1e-05
TruD 3 gielyvt.dtegigGrlrespeDFiVeEieef 33
gi l+++ + +g+ G++++++ DF+V+Ei +
sp|Q08647|PUS7_YEAST 44 GITLFLSpELPGFRGQIKQRYTDFLVNEIDQE 75
66666553679******************443 PP
== domain 2 score: 237.6 bits; conditional E-value: 1.2e-74
TruD 42 geylvlrvekrnwdtldlvrelaralgisrkrvgfaGtKDkrAvTtQlisirkvepeelekl..eikdvelevvgrarrklrlGdLaGN 128
+++ ++++k+n dt+++v+ +++ l++ ++ +++aGtKD+rAvT Q +si+k+ ++l++l ++k++ + + ++ +l+lGdL+GN
sp|Q08647|PUS7_YEAST 217 KDFIHFTLHKENKDTMEAVNVITKLLRVPSRVIRYAGTKDRRAVTCQRVSISKIGLDRLNALnrTLKGMIIGNYNFSDASLNLGDLKGN 305
467999****************************************************99998899*********************** PP
TruD 129 kFeirvrdv.aeee..eaakraeeileelkekggvPNyfGvQRFGsrrpvthlvGkaivkgdleeAveayvgkpfeeesedtreareav 214
+F +++rdv + ++ ++++ +++ ++l+e+g + NyfG+QRFG+ th++G++++ ++++A+e +++++ + ++ ++ear++
sp|Q08647|PUS7_YEAST 306 EFVVVIRDVtTGNSevSLEEIVSNGCKSLSENG-FINYFGMQRFGTFSISTHTIGRELLLSNWKKAAELILSDQDNVLPK-SKEARKIW 392
********9543334455677788888899988.*********************************9999988766655.59****** PP
TruD 215 aetgdleealeelpkslryEramlkrLae.........kpkdykkAlealpknLqrlFvhAyqSylFNrvlseRlerglpldepveGDv 294
aet+d++ al+++p+++ E a+l +L + ++++y A+ ++p+nL+ ++vhAyqSy++N + s+R+e + v GD+
sp|Q08647|PUS7_YEAST 393 AETKDAALALKQMPRQCLAENALLYSLSNqrkeedgtySENAYYTAIMKIPRNLRTMYVHAYQSYVWNSIASKRIELH--GLKLVVGDL 479
*****************************9999999999999**********************************65..4589***** PP
TruD 295 vifaeer.................lpdtdrlqlvteknveevkrliergrafvtaplvGtetelae.gevgeierevleeegleledFk 365
vi+++e+ ++ r ++vt++ ++ ++ v++p +G+++ ++ +e +++ ++l+ +++++ + +
sp|Q08647|PUS7_YEAST 480 VIDTSEKsplisgiddedfdedvrEAQFIRAKAVTQEDID----SVKYTMEDVVLPSPGFDVLYPSnEELKQLYVDILKADNMDPFNMR 564
****9999*****999998543333333333333333333....4555556799*******9876515678999********9997777 PP
TruD 366 lpklpelsskGtrRaillrve..............................................dlelsaeedeltleFsLpkGsY 408
k+ ++s +G++R ++ +++ d e++ ++l+F+L Y
sp|Q08647|PUS7_YEAST 565 -RKVRDFSLAGSYRTVIQKPKsleyriihyddpsqqlvntdldilnntrakesgqkymkakldrympD--KGGEKTAVVLKFQLGTSAY 650
.5678****************9********************************99999988655321..233445599********** PP
TruD 409 ATvvlrEi 416
AT+ lrE+
sp|Q08647|PUS7_YEAST 651 ATMALREL 658
******95 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (416 nodes)
Target sequences: 6049 (2936363 residues searched)
Passed MSV filter: 230 (0.0380228); expected 121.0 (0.02)
Passed bias filter: 125 (0.0206646); expected 121.0 (0.02)
Passed Vit filter: 13 (0.00214912); expected 6.0 (0.001)
Passed Fwd filter: 1 (0.000165317); expected 0.1 (1e-05)
Initial search space (Z): 6049 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.11u 0.00s 00:00:00.11 Elapsed: 00:00:00.05
# Mc/sec: 24430.54
//
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