# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/UPF0020.hmm.txt
# target sequence database: proteomes/Ciona_intestinalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: UPF0020 [M=197]
Accession: PF01170.17
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7e-10 38.8 0.0 1.6e-08 34.4 0.0 2.3 1 tr|F6X1E1|F6X1E1_CIOIN Uncharacterized protein OS=Ciona inte
9.3e-08 31.9 0.1 3.1e-06 26.9 0.1 2.3 1 tr|F6PXD8|F6PXD8_CIOIN Uncharacterized protein OS=Ciona inte
1.3e-07 31.4 0.4 6.5e-07 29.1 0.4 1.9 1 tr|F6WB92|F6WB92_CIOIN methyltransferase-like protein 5 isof
1.2e-05 25.0 0.3 2.9e-05 23.7 0.1 1.8 2 tr|F6WNV4|F6WNV4_CIOIN Uncharacterized protein OS=Ciona inte
0.00096 18.8 0.1 0.0023 17.5 0.1 1.6 1 tr|F6TXQ6|F6TXQ6_CIOIN Serine--pyruvate aminotransferase OS=
0.0016 18.1 0.5 0.0019 17.9 0.5 1.2 1 tr|F6ZBH2|F6ZBH2_CIOIN Uncharacterized protein OS=Ciona inte
0.0017 18.0 0.0 0.0022 17.6 0.0 1.1 1 tr|F6TU78|F6TU78_CIOIN Uncharacterized protein OS=Ciona inte
Domain annotation for each sequence (and alignments):
>> tr|F6X1E1|F6X1E1_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.4 0.0 6.6e-12 1.6e-08 3 134 .. 200 326 .. 199 337 .. 0.79
Alignments for each domain:
== domain 1 score: 34.4 bits; conditional E-value: 6.6e-12
SS-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHH CS
UPF0020 3 yRefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvv 89
+R+f g++++ L+ + +l g++++++ DP+ G+G++lI aa g +++ g + ++ ++++ r k +g + + +
tr|F6X1E1|F6X1E1_CIOIN 200 KRKFIGNTSMDVMLSILMTNLGGINKNSVVCDPFVGTGSLLIPAAHFGGYVIGGDINYNI------IHARGRSSRKGAGWRQKDETI 280
799*************************************************77774444......445555677788999999999 PP
HHHHHHHHHTT-GGGEEEEE--GGG--.STTS---EEEE------- CS
UPF0020 90 qgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGer 134
+ + + + +a + + + ++ +d+i+t+pPYG+r
tr|F6X1E1|F6X1E1_CIOIN 281 RHTLMEYGLRSQYLDVLLCDAACHAWNtNGKELFDAIITDPPYGIR 326
988877665544444444444444444356778***********99 PP
>> tr|F6PXD8|F6PXD8_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.9 0.1 1.3e-09 3.1e-06 29 132 .. 82 158 .. 70 164 .. 0.91
Alignments for each domain:
== domain 1 score: 26.9 bits; conditional E-value: 1.3e-09
TS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG- CS
UPF0020 29 gepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakL 115
++++D +CGsG+ +I a +++ ++D+d+ ++ a+ Na +gv+d+i+f + + ++
tr|F6PXD8|F6PXD8_CIOIN 82 CDVIVDAFCGSGGNAIQFAFTCEKVL--------------------------AIDIDPVKLENAKHNAAIYGVEDRIDFICGSFFDI 142
57899999999999999999999999..........................9********************************** PP
-STTS---EEEE----- CS
UPF0020 116 rlkegevdvivtnpPYG 132
++ + d++ pP+G
tr|F6PXD8|F6PXD8_CIOIN 143 A-PTLKADIVFLSPPWG 158
*.999***********9 PP
>> tr|F6WB92|F6WB92_CIOIN methyltransferase-like protein 5 isoform X4 OS=Ciona intestinalis OX=7719 GN=LOC100184601 PE=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.1 0.4 2.7e-10 6.5e-07 16 171 .. 32 173 .. 27 194 .. 0.74
Alignments for each domain:
== domain 1 score: 29.1 bits; conditional E-value: 2.7e-10
HHHHHHHHTT--TTS....-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHH CS
UPF0020 16 LAaalvrlagwkpge....pllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaek 98
LAa+l+ a+ + g+ D CG G + I llgan g+D+d+ +++ ++N e+
tr|F6WB92|F6WB92_CIOIN 32 LAACLLHTAETQFGDicgkNVCDLGCGCGILSIGSSLLGANHC-------------------------LGIDIDEDALEIFQSNCEA 93
6666666666665431111456666666666666666666666.........................7****************** PP
TT-GGGEEEEE--GGG--.....STTS---EEEE----------HHHHHHHHHH..HHHHHHHH-TT..-EEEEEESSHH CS
UPF0020 99 agvgdliefsqadaakLr.....lkegevdvivtnpPYGerlgskkalekLYse..flrelkrvlrgggrlvlltsenka 171
+++++ +e qad+a + + +d+++ npP+G + ++ ++e L+ + +++ + l++++ + ++++ ++
tr|F6WB92|F6WB92_CIOIN 94 YELNNVVECIQADIARFSpsrnmILAKRFDTVLMNPPFGTKSNKGIDMEFLHAAsiLASHAVYSLHKSSTRAHIVKKAND 173
*****************98877745569*************999999999997722334444455565666656555555 PP
>> tr|F6WNV4|F6WNV4_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.1 0.0 2 4.8e+03 64 68 .. 138 146 .. 114 160 .. 0.49
2 ! 23.7 0.1 1.2e-08 2.9e-05 30 50 .. 173 193 .] 167 193 .] 0.89
Alignments for each domain:
== domain 1 score: -3.1 bits; conditional E-value: 2
S....HHHH CS
UPF0020 64 e....lkae 68
+ k++
tr|F6WNV4|F6WNV4_CIOIN 138 KmnkfQKQK 146
322221222 PP
== domain 2 score: 23.7 bits; conditional E-value: 1.2e-08
S-EEETT-TTSHHHHHHHHHH CS
UPF0020 30 epllDPmCGsGtilIEaallg 50
e+ +DPmCG+G+i++E+a+ +
tr|F6WNV4|F6WNV4_CIOIN 173 EVVVDPMCGTGSIPLEGAMEW 193
6789**************975 PP
>> tr|F6TXQ6|F6TXQ6_CIOIN Serine--pyruvate aminotransferase OS=Ciona intestinalis OX=7719 PE=3 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.5 0.1 9.8e-07 0.0023 19 51 .. 71 103 .. 66 159 .. 0.84
Alignments for each domain:
== domain 1 score: 17.5 bits; conditional E-value: 9.8e-07
HHHHHTT--TTS-EEETT-TTSHHHHHHHHHHT CS
UPF0020 19 alvrlagwkpgepllDPmCGsGtilIEaallga 51
+lvrlag + ++ + Pm GsGt++IE l a
tr|F6TXQ6|F6TXQ6_CIOIN 71 SLVRLAGGNVQTHTAIPMTGSGTFAIESTLTTA 103
79*************************988755 PP
>> tr|F6ZBH2|F6ZBH2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.9 0.5 7.8e-07 0.0019 51 123 .. 32 104 .. 16 138 .. 0.85
Alignments for each domain:
== domain 1 score: 17.9 bits; conditional E-value: 7.8e-07
TT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS--- CS
UPF0020 51 aniapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevd 123
++ia g++ e v+e+k+ea+++a++ k + s+ ++ +v+++ + + + +++ +f+ ++a++L+ +++
tr|F6ZBH2|F6ZBH2_CIOIN 32 KRIAGGKYLEDVSEAKQEAKTKAHEAFKTFTSNYNKDLVKKCLKDLDNVIESKQKQFERKNAKQLEVLDADLS 104
56777778888888***************************************************95555444 PP
>> tr|F6TU78|F6TU78_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.6 0.0 9.3e-07 0.0022 86 160 .. 36 115 .. 15 124 .. 0.88
Alignments for each domain:
== domain 1 score: 17.6 bits; conditional E-value: 9.3e-07
HHHHHHHHHHHHHTT-GGGEEEEE--GGG--......STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT.. CS
UPF0020 86 rrvvqgareNaekagvgdliefsqadaakLr......lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrggg 160
+++ + a++N + + + i ++ da+kL+ l+ ++++ i+ n P r s +++++L ++f ++k+vl++ g
tr|F6TU78|F6TU78_CIOIN 36 QKYGEEANKNMTELKRHGAIVLNGVDATKLHqnlsefLP-KKFEKIIFNFPHTGRKASIRKNRELLRNFFLSAKEVLDQWG 115
56668899***********************87665333.48************************************944 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (197 nodes)
Target sequences: 16678 (5370518 residues searched)
Passed MSV filter: 420 (0.0251829); expected 333.6 (0.02)
Passed bias filter: 313 (0.0187672); expected 333.6 (0.02)
Passed Vit filter: 32 (0.0019187); expected 16.7 (0.001)
Passed Fwd filter: 7 (0.000419715); expected 0.2 (1e-05)
Initial search space (Z): 16678 [actual number of targets]
Domain search space (domZ): 7 [number of targets reported over threshold]
# CPU time: 0.10u 0.00s 00:00:00.10 Elapsed: 00:00:00.04
# Mc/sec: 26449.80
//
[ok]