# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/UPF0020.hmm.txt
# target sequence database: proteomes/Ciona_savignyi.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: UPF0020 [M=197]
Accession: PF01170.17
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.4e-30 105.1 0.0 6.7e-29 100.4 0.0 2.2 1 tr|H2ZB54|H2ZB54_CIOSA Uncharacterized protein OS=Ciona savi
1.6e-08 33.9 0.0 2.5e-07 30.0 0.0 2.2 1 tr|H2ZN24|H2ZN24_CIOSA Uncharacterized protein OS=Ciona savi
3.7e-07 29.4 0.2 1.7e-06 27.2 0.2 2.0 1 tr|H2ZQD2|H2ZQD2_CIOSA Uncharacterized protein OS=Ciona savi
0.00016 20.8 0.1 0.00044 19.4 0.1 1.7 1 tr|H2ZEY8|H2ZEY8_CIOSA Serine--pyruvate aminotransferase OS=
Domain annotation for each sequence (and alignments):
>> tr|H2ZB54|H2ZB54_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 100.4 0.0 2.3e-32 6.7e-29 7 195 .. 226 392 .. 221 394 .. 0.90
Alignments for each domain:
== domain 1 score: 100.4 bits; conditional E-value: 2.3e-32
S---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHH CS
UPF0020 7 ngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgar 93
+g ++L++t+A+ ++rl+ +pg+ +DPmCGsG+i++E+a++++++ + ++ D+ + +v ++
tr|H2ZB54|H2ZB54_CIOSA 226 FGRTTLRSTIAYNMLRLCAPQPGDIVVDPMCGSGSIPLEGAMQWKDCFH------------------------VAGDNCKPAVSRTT 288
4689********************************************4........................78899999999999 PP
HHHHHTT-GGGEEEEE--GGG--STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT...-EEEEEESSHHHHHCC--- CS
UPF0020 94 eNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgg.grlvlltsenkalekaleer 179
N + + +e+ +da+ L+ k+g++dv vt++P+G+r+gs+ +++ LY+ fl e++rv + g r+++lt ++++ ka+++
tr|H2ZB54|H2ZB54_CIOSA 289 GNVLSN-DNCPVEVIRWDATRLPWKSGSIDVCVTDLPFGRRMGSQTDNRILYPRFLFEVARVAKLGvTRTCILTYDRRSALKAISQL 374
997654.46789***********9999*************************************9889***********99999986 PP
..ESEEEEEEETTEEEEE CS
UPF0020 180 ..alrkvkeknvklglll 195
+ + + v++g+l+
tr|H2ZB54|H2ZB54_CIOSA 375 skFWSLKRTVCVNIGGLR 392
556777788888888776 PP
>> tr|H2ZN24|H2ZN24_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.0 0.0 8.5e-11 2.5e-07 30 133 .. 100 176 .. 87 241 .. 0.78
Alignments for each domain:
== domain 1 score: 30.0 bits; conditional E-value: 8.5e-11
S-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG-- CS
UPF0020 30 epllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLr 116
+ ++D +CGsG+ I a ++++ ++D+d+ ++ ar Na +gv+d+ief + + +L
tr|H2ZN24|H2ZN24_CIOSA 100 DIIVDAFCGSGGNSIQFAFTCERVI--------------------------AIDIDPVKLENARHNAAIYGVEDRIEFICGSFFDLA 160
6788888888888888888888888..........................9*********************************** PP
STTS---EEEE------ CS
UPF0020 117 lkegevdvivtnpPYGe 133
++ + dvi pP+G
tr|H2ZN24|H2ZN24_CIOSA 161 -PTLKADVIFLSPPWGG 176
.999***********93 PP
>> tr|H2ZQD2|H2ZQD2_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.2 0.2 6e-10 1.7e-06 79 141 .. 74 141 .. 28 190 .. 0.78
Alignments for each domain:
== domain 1 score: 27.2 bits; conditional E-value: 6e-10
EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.....STTS---EEEE----------HHHH CS
UPF0020 79 lygsDldrrvvqgareNaekagvgdliefsqadaakLr.....lkegevdvivtnpPYGerlgskkal 141
g+D+d++++ +N e ++++ +++ + d+ kL l+++++d+++ npP+G + ++ ++
tr|H2ZQD2|H2ZQD2_CIOSA 74 CLGVDIDKEALGIFLSNCEDYELESTVDCVHSDVVKLAscrnvLRKKQFDTVIMNPPFGTKSNKGIDM 141
47***********************************9999998888************987665444 PP
>> tr|H2ZEY8|H2ZEY8_CIOSA Serine--pyruvate aminotransferase OS=Ciona savignyi OX=51511 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.4 0.1 1.5e-07 0.00044 19 50 .. 31 62 .. 26 145 .. 0.88
Alignments for each domain:
== domain 1 score: 19.4 bits; conditional E-value: 1.5e-07
HHHHHTT--TTS-EEETT-TTSHHHHHHHHHH CS
UPF0020 19 alvrlagwkpgepllDPmCGsGtilIEaallg 50
+lv+lag++ ++ + Pm GsGt++IE l
tr|H2ZEY8|H2ZEY8_CIOSA 31 SLVQLAGVNTNTHTAIPMAGSGTLAIESTLST 62
79*************************98865 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (197 nodes)
Target sequences: 11592 (4231397 residues searched)
Passed MSV filter: 326 (0.0281228); expected 231.8 (0.02)
Passed bias filter: 263 (0.0226881); expected 231.8 (0.02)
Passed Vit filter: 27 (0.00232919); expected 11.6 (0.001)
Passed Fwd filter: 4 (0.000345066); expected 0.1 (1e-05)
Initial search space (Z): 11592 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.09u 0.00s 00:00:00.09 Elapsed: 00:00:00.04
# Mc/sec: 20839.63
//
[ok]