# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/UPF0020.hmm.txt
# target sequence database: proteomes/Dictyostelium_discoideum.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: UPF0020 [M=197]
Accession: PF01170.17
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.1e-11 42.8 0.1 6.8e-09 35.2 0.1 3.5 2 sp|Q54BW1|Y3380_DICDI Putative uncharacterized protein DDB_
2.3e-07 30.2 0.2 0.016 14.5 0.0 2.6 3 sp|Q54QA6|TRM11_DICDI tRNA (guanine(10)-N2)-methyltransfera
9.2e-05 21.7 0.1 0.0037 16.5 0.1 2.2 1 tr|Q54VE3|Q54VE3_DICDI Uncharacterized protein OS=Dictyostel
------ inclusion threshold ------
0.011 15.0 0.1 0.031 13.5 0.1 1.8 1 sp|Q54WD6|TRM5_DICDI tRNA (guanine(37)-N1)-methyltransfera
0.014 14.6 0.1 0.056 12.6 0.0 2.0 2 tr|Q54NF6|Q54NF6_DICDI Uncharacterized protein OS=Dictyostel
0.015 14.5 0.0 0.058 12.6 0.0 2.0 2 tr|Q553T0|Q553T0_DICDI Uncharacterized protein OS=Dictyostel
Domain annotation for each sequence (and alignments):
>> sp|Q54BW1|Y3380_DICDI Putative uncharacterized protein DDB_G0293380 OS=Dictyostelium discoideum OX=44689 GN=DDB_G029
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 35.2 0.1 3.2e-12 6.8e-09 10 138 .. 258 437 .. 249 457 .. 0.71
2 ? 1.4 0.0 0.075 1.6e+02 139 185 .. 491 537 .. 487 545 .. 0.87
Alignments for each domain:
== domain 1 score: 35.2 bits; conditional E-value: 3.2e-12
-SS-HHHHHHHHHH.........TT--TT.......S-EEETT-TTSHHHHHHHHHHTT--TTTT----SS................H CS
UPF0020 10 apLketLAaalvrl.........agwkpg.......epllDPmCGsGtilIEaallganiapgllrefvle................l 65
ap++etLA+a+++ +g ++g + + DP+ GsGt+ Ea + ++ p + +
sp|Q54BW1|Y3380_DICDI 258 APIRETLASAIIMAiisstrrvgSGTTEGsyldlnkTNIWDPFVGSGTLIQEAISMLLKAKPSSCTNYKRSfqferfknhsterylkY 345
6666666666665333322333344444411111115799**************999999886553333224557******9998777 PP
HHHHHHHHHHH--...EEEEES-HHHHHHHHHHHHHTT-GG.GEEEEE--GGG--...............STTS---EEEE------- CS
UPF0020 66 kaeaeeearaelk...lygsDldrrvvqgareNaekagvgd.liefsqadaakLr...............lkegevdvivtnpPYGer 134
++ +++ + + +k l+gsD+d+++++ + N++k g ++ i+f + d++++ +++++ +i+tn+PYG r
sp|Q54BW1|Y3380_DICDI 346 LESINKPISPLIKntiLIGSDIDQKAIDSSIFNLSKQGYQHeNIKFFKGDFKSIYldqinidnsldddgdNNNNKPFTIITNLPYGTR 433
7777777775555667*********************9976269****9*9998766776667666665533444459*********9 PP
---H CS
UPF0020 135 lgsk 138
+ +
sp|Q54BW1|Y3380_DICDI 434 VLNR 437
8655 PP
== domain 2 score: 1.4 bits; conditional E-value: 0.075
HHHHHHHHHHHHHHHHH-TT..-EEEEEESSHHHHHCC---ESEEEE CS
UPF0020 139 kalekLYseflrelkrvlrgggrlvlltsenkalekaleeralrkvk 185
k+l++L++ f++ +++ ++ r v+++++n+ ++++ ++ ++++
sp|Q54BW1|Y3380_DICDI 491 KDLRDLFKRFGDMIHESNESVLRDVFVLNGNSHFQSISTNNGKNNFE 537
67899***********999999*************999888776665 PP
>> sp|Q54QA6|TRM11_DICDI tRNA (guanine(10)-N2)-methyltransferase homolog OS=Dictyostelium discoideum OX=44689 GN=trmt11
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.8 0.0 2.8 6e+03 143 167 .. 84 108 .. 81 131 .. 0.64
2 ! 13.0 0.0 2.1e-05 0.045 4 54 .. 206 256 .. 204 283 .. 0.87
3 ! 14.5 0.0 7.3e-06 0.016 119 139 .. 302 322 .. 292 328 .. 0.87
Alignments for each domain:
== domain 1 score: -3.8 bits; conditional E-value: 2.8
HHHHHHHHHHHHH-TT..-EEEEEE CS
UPF0020 143 kLYseflrelkrvlrgggrlvllts 167
+L +e+l+el++ ++++ + ++++
sp|Q54QA6|TRM11_DICDI 84 QLLDEILNELHSKFDKQFLSNYMIN 108
6777888888888877544444444 PP
== domain 2 score: 13.0 bits; conditional E-value: 2.1e-05
S-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT-- CS
UPF0020 4 RefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallgania 54
R++ g +++ ++L+ + ++ +k+g+ lDP+ G+G++ + a ga+ +
sp|Q54QA6|TRM11_DICDI 206 RKYLGTTSMDPELSLVSANMGLVKKGHFVLDPFVGTGSFILVASHFGAQTV 256
889999*********************************998887777665 PP
== domain 3 score: 14.5 bits; conditional E-value: 7.3e-06
TS---EEEE----------HH CS
UPF0020 119 egevdvivtnpPYGerlgskk 139
++ +d+i+t+pPYG+r g+ k
sp|Q54QA6|TRM11_DICDI 302 NSMFDSIITDPPYGIRAGARK 322
5679************99865 PP
>> tr|Q54VE3|Q54VE3_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0205190 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.5 0.1 1.7e-06 0.0037 77 114 .. 70 107 .. 30 116 .. 0.77
Alignments for each domain:
== domain 1 score: 16.5 bits; conditional E-value: 1.7e-06
--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG CS
UPF0020 77 lklygsDldrrvvqgareNaekagvgdliefsqadaak 114
++ +g+D+++++++ a+eNa+k gv++l+ f++ d+a+
tr|Q54VE3|Q54VE3_DICDI 70 IRGIGLDINPELIKSANENAKKEGVDHLVLFKVQDFAN 107
3458*****************************99874 PP
>> sp|Q54WD6|TRM5_DICDI tRNA (guanine(37)-N1)-methyltransferase OS=Dictyostelium discoideum OX=44689 GN=trmt5 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.5 0.1 1.5e-05 0.031 75 130 .. 235 294 .. 207 296 .. 0.85
Alignments for each domain:
== domain 1 score: 13.5 bits; conditional E-value: 1.5e-05
HH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--....STTS---EEEE--- CS
UPF0020 75 aelklygsDldrrvvqgareNaekagvgdliefsqadaakLr....lkegevdvivtnpP 130
++ k+y+ Dl+++ v+ +eNa+ +++ ++e+s++da+++ +k+ + +v n+P
sp|Q54WD6|TRM5_DICDI 235 KKCKVYANDLNPSSVKYMKENAKTNRLESKVEISNLDARDFVkslvEKSIPFTHVVMNLP 294
66789**********************************998665444556777777777 PP
>> tr|Q54NF6|Q54NF6_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0186431 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.2 0.0 1.9 4.1e+03 77 108 .. 247 280 .. 224 291 .. 0.69
2 ? 12.6 0.0 2.6e-05 0.056 29 119 .. 324 408 .. 313 417 .. 0.75
Alignments for each domain:
== domain 1 score: -3.2 bits; conditional E-value: 1.9
--EEEEES-HHHHHHHHHHHHH..TT-GGGEEEE CS
UPF0020 77 lklygsDldrrvvqgareNaek..agvgdliefs 108
+++ g ++ + +a +N ++ a+ ++ i fs
tr|Q54NF6|Q54NF6_DICDI 247 AEISGCKVIWHKIMTAHSNISNnkATFTHMICFS 280
4577777788888888888654115555555555 PP
== domain 2 score: 12.6 bits; conditional E-value: 2.6e-05
TS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEE.S-HHHHHHHHHHHHHTT-GGGEEEEE--GGG CS
UPF0020 29 gepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsD.ldrrvvqgareNaekagvgdliefsqadaak 114
++++DP+CG G++l a + g + + l + +++++ +l + ++ +d+rv q++++N ++ ++d ++++ d +
tr|Q54NF6|Q54NF6_DICDI 324 STTIIDPFCGKGSVLAVANVYGLDSVGVDL------SSGKTKNSFNLQLDVETVNkFDPRVWQQSNNNKSNLLIKDNDNIEDNDESD 404
579************999999999993222......334445555555555555526899999999999999999999999999999 PP
--STT CS
UPF0020 115 Lrlke 119
++ ++
tr|Q54NF6|Q54NF6_DICDI 405 IT-NN 408
88.33 PP
>> tr|Q553T0|Q553T0_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0202574 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.6 0.0 0.62 1.3e+03 139 173 .. 134 167 .. 127 190 .. 0.63
2 ? 12.6 0.0 2.7e-05 0.058 77 125 .. 263 311 .. 233 362 .. 0.84
Alignments for each domain:
== domain 1 score: -1.6 bits; conditional E-value: 0.62
HHHHHHHHHHHHHHHHH-TT..-EEEEEESSHHHH CS
UPF0020 139 kalekLYseflrelkrvlrgggrlvlltsenkale 173
+++ + +++fl+++k+ +++ g +v +++++ ++
tr|Q553T0|Q553T0_DICDI 134 REMTHTWNAFLESIKKTVET-GSIVKIAPQEDVVK 167
55556678899999998888.66666666555544 PP
== domain 2 score: 12.6 bits; conditional E-value: 2.7e-05
--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EE CS
UPF0020 77 lklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvi 125
k++g++++++ v a + a+ gv+d+ +f da k++ +++ +dv+
tr|Q553T0|Q553T0_DICDI 263 CKIRGLNINKKQVGIATQRAKDLGVSDRASFDHGDAMKMPYPDNTFDVV 311
5799************************************999999987 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (197 nodes)
Target sequences: 12739 (6856946 residues searched)
Passed MSV filter: 441 (0.0346181); expected 254.8 (0.02)
Passed bias filter: 270 (0.0211948); expected 254.8 (0.02)
Passed Vit filter: 26 (0.00204098); expected 12.7 (0.001)
Passed Fwd filter: 6 (0.000470995); expected 0.1 (1e-05)
Initial search space (Z): 12739 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.12u 0.01s 00:00:00.13 Elapsed: 00:00:00.05
# Mc/sec: 27016.37
//
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