# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/UPF0020.hmm.txt
# target sequence database: proteomes/Monosiga_brevicollis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: UPF0020 [M=197]
Accession: PF01170.17
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2e-21 75.7 0.0 1.1e-20 73.3 0.0 1.9 1 tr|A9V244|A9V244_MONBE Predicted protein OS=Monosiga brevico
5.8e-20 70.9 0.1 2.7e-19 68.7 0.1 2.0 1 tr|A9V3Y6|A9V3Y6_MONBE Predicted protein OS=Monosiga brevico
8.3e-09 34.5 0.5 6.6e-08 31.5 0.5 2.0 1 tr|A9UP83|A9UP83_MONBE Uncharacterized protein OS=Monosiga b
4.1e-08 32.2 0.1 1.7e-06 26.9 0.1 2.5 1 tr|A9V5Q5|A9V5Q5_MONBE Predicted protein OS=Monosiga brevico
1.3e-06 27.3 0.2 1.1e-05 24.2 0.2 2.0 1 tr|A9UR20|A9UR20_MONBE Uncharacterized protein (Fragment) OS
0.0049 15.6 0.0 0.0085 14.9 0.0 1.3 1 tr|A9UV84|A9UV84_MONBE Predicted protein OS=Monosiga brevico
Domain annotation for each sequence (and alignments):
>> tr|A9V244|A9V244_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=37501 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 73.3 0.0 6.9e-24 1.1e-20 4 193 .. 443 612 .. 441 615 .. 0.91
Alignments for each domain:
== domain 1 score: 73.3 bits; conditional E-value: 6.9e-24
S-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHH CS
UPF0020 4 RefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvq 90
R +g ++L+ ++Aa+l r+a+ p+e+ lDPmCG ti++E + ++ + sD+dr+ ++
tr|A9V244|A9V244_MONBE 443 RTEQGYSSLQTSVAAGLGRIARPWPNEVCLDPMCGAMTIAVETVTEFPDVT------------------------FLNSDIDRESLA 505
7788899********************************************........................899********* PP
HHHHHHHHTT-...GGGEEEEE--GGG--STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSHHHHH CS
UPF0020 91 gareNaekagv...gdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltsenkalek 174
+++ N +++ + +i a a++L+l g vd +v+++P+G+r ++ + ++kLY+ +l e +rv+r ggr+ llt +k++e
tr|A9V244|A9V244_MONBE 506 TGKANVNACLPpsaQARILSFYASARHLPLGVGAVDRVVCDMPWGKRCSKPRLMRKLYPLLLVEWARVVRPGGRAYLLTMMRKCMEM 592
*****99986511145666667799****99******************************************************** PP
CC---.ESEEEEEEETTEEE CS
UPF0020 175 aleer.alrkvkeknvklgl 193
l + ++++ ++ ++g+
tr|A9V244|A9V244_MONBE 593 HLTTStNWQQLDRRQCNVGG 612
9999989**99999888876 PP
>> tr|A9V3Y6|A9V3Y6_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=9648 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 68.7 0.1 1.8e-22 2.7e-19 6 172 .. 274 417 .. 270 433 .. 0.92
Alignments for each domain:
== domain 1 score: 68.7 bits; conditional E-value: 1.8e-22
SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHH CS
UPF0020 6 fngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqga 92
+ + L++ + + la+++pg+ +DPm G G++l Eaa + ++ g+D+ ++ +++
tr|A9V3Y6|A9V3Y6_MONBE 274 DVVEEGLRAGVGVTMALLARLEPGDIVVDPMAGRGSLLAEAARMFPDAH------------------------YLGMDMTNNQLRRM 336
55566789999999********************************999........................79************ PP
HHHHHHTT-GGGEEEEE--GGG--.STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSHHH CS
UPF0020 93 reNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltsenkal 172
+N + + g + ++ +a +++ + l+ g+vd+i++++PYG+ gs++a+++LY+ l ++++ lr+ggr+v++t++++++
tr|A9V3Y6|A9V3Y6_MONBE 337 AQNFHVSRSGASFDVLTASVTANPcLRPGSVDAILCDLPYGRMYGSQEANRELYPRALATMASLLRKGGRAVFITAKDQQI 417
*******************9999988899**********************************************998865 PP
>> tr|A9UP83|A9UP83_MONBE Uncharacterized protein OS=Monosiga brevicollis OX=81824 GN=14119 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 31.5 0.5 4.3e-11 6.6e-08 8 140 .. 29 139 .. 24 187 .. 0.83
Alignments for each domain:
== domain 1 score: 31.5 bits; conditional E-value: 4.3e-11
---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHH CS
UPF0020 8 gpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgare 94
a++ + +A + + g g++ +D CG G + I al+ga+ + ++D+d+++++ a +
tr|A9UP83|A9UP83_MONBE 29 TSAHIAAHMAFTMENAFGDLLGKTVVDLGCGCGMLSIACALQGADHV-------------------------LAVDIDSAALDIALD 90
57999999999999999999999999999********9999999999.........................7************** PP
HHHHTT-GGGEEEEE--GG.G--..STTS---EEEE----------HHH CS
UPF0020 95 Naekagvgdliefsqadaa.kLr..lkegevdvivtnpPYGerlgskka 140
Na + +++d i+f+ ada L +vd++v npP+G + ++ +
tr|A9UP83|A9UP83_MONBE 91 NAARLELEDDIDFVLADAPwPLAlgPGARQVDTVVMNPPFGTKHNAGLD 139
*****************9534554345559***********98766555 PP
>> tr|A9V5Q5|A9V5Q5_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=38107 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.9 0.1 1.1e-09 1.7e-06 3 134 .. 647 773 .. 646 782 .. 0.72
Alignments for each domain:
== domain 1 score: 26.9 bits; conditional E-value: 1.1e-09
SS-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHH CS
UPF0020 3 yRefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvv 89
R++ g++++ ++LA + ++ +++pg+ +DP+CG+ ++l+ a g + + ++++ + + + r+ s + r
tr|A9V5Q5|A9V5Q5_MONBE 647 TRNMIGNTSMDPELAFFMANMVQAQPGTLAYDPFCGTASLLVPVAYFGGMTM---GSDIAFQVVHGVGKTSRQGTG---S-KTRGPK 726
588899*************************************999888877...444555555555555553222...2.222233 PP
HHHHHHHHHTT-GGGE.EEEE--GGG--.STTS---EEEE------- CS
UPF0020 90 qgareNaekagvgdli.efsqadaakLr.lkegevdvivtnpPYGer 134
+ N e++++ d+ ++ +adaa+ +++ +d+iv++pPYG+r
tr|A9V5Q5|A9V5Q5_MONBE 727 ENILANYEQYELLDKFgDVLVADAANPSfRQDILFDMIVADPPYGIR 773
3444677777776654255556666544336669***********99 PP
>> tr|A9UR20|A9UR20_MONBE Uncharacterized protein (Fragment) OS=Monosiga brevicollis OX=81824 GN=2498 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.2 0.2 7.5e-09 1.1e-05 44 132 .. 59 127 .. 32 132 .. 0.75
Alignments for each domain:
== domain 1 score: 24.2 bits; conditional E-value: 7.5e-09
HHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--......STTS---E CS
UPF0020 44 IEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLr......lkegevdv 124
I al a ++ ++Dld+ +++ar Na+ +gv+d+i+f+ da ++ + + vd+
tr|A9UR20|A9UR20_MONBE 59 IQMAL--------------------------AGCQVLAIDLDPVKLEAARHNASIYGVEDQIDFVHGDAVSVLrqlastNGSTRVDA 119
33333..........................444566*******************************976544665433344899* PP
EEE----- CS
UPF0020 125 ivtnpPYG 132
+ pP+G
tr|A9UR20|A9UR20_MONBE 120 VFLSPPWG 127
*******9 PP
>> tr|A9UV84|A9UV84_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=36368 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.9 0.0 5.5e-06 0.0085 92 143 .. 196 247 .. 173 252 .. 0.86
Alignments for each domain:
== domain 1 score: 14.9 bits; conditional E-value: 5.5e-06
HHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE----------HHHHHH CS
UPF0020 92 areNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalek 143
r+Na++ g++d+ ++ + +++ l+ ++ d+iv+n+PY + s a e+
tr|A9UV84|A9UV84_MONBE 196 IRRNAQRLGLADRLHVLCGRLQDVALAWDQADLIVANLPYVPTTRSSTAAEE 247
589**********************9999***********999888888776 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (197 nodes)
Target sequences: 9188 (5511963 residues searched)
Passed MSV filter: 317 (0.0345015); expected 183.8 (0.02)
Passed bias filter: 203 (0.022094); expected 183.8 (0.02)
Passed Vit filter: 22 (0.00239443); expected 9.2 (0.001)
Passed Fwd filter: 6 (0.000653026); expected 0.1 (1e-05)
Initial search space (Z): 9188 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.12u 0.01s 00:00:00.13 Elapsed: 00:00:00.06
# Mc/sec: 18097.61
//
[ok]