# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/UPF0020.hmm.txt # target sequence database: proteomes/Nematostella_vectensis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: UPF0020 [M=197] Accession: PF01170.17 Description: Putative RNA methylase family UPF0020 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.9e-36 123.9 0.0 1.3e-33 116.8 0.0 2.3 1 tr|A7S7Y0|A7S7Y0_NEMVE Predicted protein OS=Nematostella vec 1e-09 38.8 0.1 1.2e-08 35.3 0.1 2.4 1 tr|A7RQD1|A7RQD1_NEMVE Predicted protein OS=Nematostella vec 3.1e-08 34.0 0.1 2.3e-07 31.1 0.1 2.1 1 tr|A7SAF9|A7SAF9_NEMVE Predicted protein OS=Nematostella vec 1.1e-07 32.1 0.0 0.0022 18.1 0.0 2.4 2 tr|A8DW28|A8DW28_NEMVE Predicted protein OS=Nematostella vec 9.5e-06 25.9 0.0 1.6e-05 25.1 0.0 1.3 1 tr|A7RQR0|A7RQR0_NEMVE Predicted protein OS=Nematostella vec 0.0013 18.9 0.1 0.007 16.5 0.1 2.1 1 tr|A7RYK6|A7RYK6_NEMVE Predicted protein OS=Nematostella vec 0.0013 18.9 0.1 0.007 16.5 0.1 2.0 1 tr|A7T8E8|A7T8E8_NEMVE Predicted protein OS=Nematostella vec 0.0018 18.4 0.0 0.0045 17.1 0.0 1.7 1 tr|A7RVI7|A7RVI7_NEMVE 2-methoxy-6-polyprenyl-1,4-benzoquino ------ inclusion threshold ------ 0.034 14.3 0.0 0.047 13.8 0.0 1.3 1 tr|A7SJF3|A7SJF3_NEMVE Predicted protein OS=Nematostella vec 0.043 13.9 0.3 0.19 11.8 0.3 1.9 1 tr|A7SVE2|A7SVE2_NEMVE Predicted protein OS=Nematostella vec 0.058 13.5 0.0 0.092 12.9 0.0 1.3 1 tr|A7TBN7|A7TBN7_NEMVE Predicted protein (Fragment) OS=Nemat 0.065 13.4 0.2 0.23 11.6 0.2 1.8 1 tr|A7SVE3|A7SVE3_NEMVE Predicted protein OS=Nematostella vec 0.069 13.3 0.2 0.24 11.5 0.2 1.8 1 tr|A7SY09|A7SY09_NEMVE Predicted protein OS=Nematostella vec 0.094 12.8 0.0 0.26 11.4 0.0 1.7 2 tr|A7RW11|A7RW11_NEMVE rRNA adenine N(6)-methyltransferase O 0.11 12.6 0.3 0.41 10.7 0.3 1.8 1 tr|A7SY10|A7SY10_NEMVE Predicted protein OS=Nematostella vec 0.11 12.6 0.0 0.18 11.9 0.0 1.3 1 tr|A7RHA8|A7RHA8_NEMVE Predicted protein OS=Nematostella vec 0.15 12.1 0.0 0.23 11.5 0.0 1.3 1 tr|A7SJ10|A7SJ10_NEMVE Predicted protein OS=Nematostella vec Domain annotation for each sequence (and alignments): >> tr|A7S7Y0|A7S7Y0_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g167545 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 116.8 0.0 8.9e-37 1.3e-33 5 195 .. 196 369 .. 192 371 .. 0.87 Alignments for each domain: == domain 1 score: 116.8 bits; conditional E-value: 8.9e-37 -SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHH CS UPF0020 5 efngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqg 91 e +gp++Lk++LA++l++la++k g++ DPmCG+G+i+IEa l + +++ ++ D + + + tr|A7S7Y0|A7S7Y0_NEMVE 196 EHFGPTTLKSSLAYCLLKLADIKTGDVVCDPMCGGGSIPIEALLNWPLCVH------------------------ICGDHHELAPSR 258 4578**********************************************5........................788888888888 PP HHHHHHHTT-GG....GEEEEE--GGG--STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT...-EEEEEESSHHHH CS UPF0020 92 areNaekagvgd....liefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgg.grlvlltsenkale 173 + N+++ + ++ +++q+d+++L+ k++++dvivt++P+G++ gsk+++++LY++ l+el+rv+ + gr+v+lt+++kal+ tr|A7S7Y0|A7S7Y0_NEMVE 259 TLANLSALTSKQnrklPLDIYQWDVCNLPFKTNSMDVIVTDLPFGKKSGSKQNNWSLYPQALDELARVCPPKtGRAVILTHDKKALA 345 88888776655411116899*********9999************************************9988************** PP HCC---..ESEEEEEEETTEEEEE CS UPF0020 174 kaleer..alrkvkeknvklglll 195 k l+++ ++ + +v++g+l+ tr|A7S7Y0|A7S7Y0_NEMVE 346 KTLQRMqkWWKVKLTLWVNMGGLQ 369 ****99844455556799998876 PP >> tr|A7RQD1|A7RQD1_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g161519 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.3 0.1 8.4e-12 1.2e-08 3 136 .. 183 310 .. 182 317 .. 0.74 Alignments for each domain: == domain 1 score: 35.3 bits; conditional E-value: 8.4e-12 SS-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHH CS UPF0020 3 yRefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvv 89 R+f g++++ + L+ + + +++pg+ ++DP+ G+G il+ a g +++ + ++ ++ + k ++ ++++ tr|A7RQD1|A7RQD1_NEMVE 183 TRHFIGNTSMDPLLSFLMANQGKARPGTLIFDPFVGTGNILLACAHFGGHVIGSDIDKNLVQ--G-------RGCKSSRANCKWKAR 260 69**************************************************4444222222..2.......222223333333333 PP .HHHHHHHHHTT-GGG.EEEEE--GGG..--STTS---EEEE--------- CS UPF0020 90 .qgareNaekagvgdl.iefsqadaak..LrlkegevdvivtnpPYGerlg 136 + r+N ++ag+++l +++ ada Lr ++ +d+i+t+pPYG r g tr|A7RQD1|A7RQD1_NEMVE 261 dEVMRTNFRQAGLEQLfVDAIIADASRsvLR-ATPIFDAIITDPPYGVREG 310 13458999***99985367777777542255.7779***********9966 PP >> tr|A7SAF9|A7SAF9_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g243959 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.1 0.1 1.6e-10 2.3e-07 42 132 .. 66 129 .. 41 199 .. 0.83 Alignments for each domain: == domain 1 score: 31.1 bits; conditional E-value: 1.6e-10 HHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE- CS UPF0020 42 ilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtn 128 +I a ++ ++++D+d+ +++ar Nae +gv+d+ief+ d++++ ++ + dvi tr|A7SAF9|A7SAF9_NEMVE 66 NAIQFAFTCER--------------------------VIAIDIDPVKIDCARHNAEIYGVADRIEFVLGDFRQIV-PQLKADVIFLS 125 44444444444..........................559***********************************.9999******* PP ---- CS UPF0020 129 pPYG 132 pP+G tr|A7SAF9|A7SAF9_NEMVE 126 PPWG 129 ***9 PP >> tr|A8DW28|A8DW28_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g225887 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.1 0.0 1.6e-06 0.0022 20 103 .. 1 93 [. 1 116 [. 0.74 2 ! 11.8 0.0 0.00014 0.2 110 143 .. 130 163 .. 109 169 .. 0.72 Alignments for each domain: == domain 1 score: 18.1 bits; conditional E-value: 1.6e-06 HHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS...........HHHHHHHHHH..HH--EEEEES-HHHHHHHH CS UPF0020 20 lvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvle...........lkaeaeeear..aelklygsDldrrvvqgar 93 +v++ + ++ ++ lD CGsG++l+ ++ +++ + +e e++e+ r ae ++yg+D+d+ + ++ar tr|A8DW28|A8DW28_NEMVE 1 MVEMLNPNEKTRVLDXACGSGGFLV---MVLEHVRKQIAKELY-PdledvllaekfNTYEVNERVRqyAETNIYGFDFDPDLKKAAR 83 889999999***************9...444444433333333.2467788877655556666666555666*************** PP HHHHHTT-GG CS UPF0020 94 eNaekagvgd 103 N ag g+ tr|A8DW28|A8DW28_NEMVE 84 MNMVMAGDGH 93 **99998665 PP == domain 2 score: 11.8 bits; conditional E-value: 0.00014 --GGG--STTS---EEEE----------HHHHHH CS UPF0020 110 adaakLrlkegevdvivtnpPYGerlgskkalek 143 d+ ++g++d+i tnpP+G +++ +k++ + tr|A8DW28|A8DW28_NEMVE 130 IDNNYTDDARGKFDMIFTNPPFGAKVKVEKEIAD 163 444434467889*************999998765 PP >> tr|A7RQR0|A7RQR0_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g90326 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.1 0.0 1.1e-08 1.6e-05 74 131 .. 72 129 .. 53 134 .. 0.92 Alignments for each domain: == domain 1 score: 25.1 bits; conditional E-value: 1.1e-08 HHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE---- CS UPF0020 74 raelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPY 131 +++++ +++D + +v+ +r Na+++g++ + e++ + +L+ + +++d+iv+npPY tr|A7RQR0|A7RQR0_NEMVE 72 NEKASGVAIDVSPVAVKLTRLNAHRCGMNCRLELYHCPIGELNMTLKKFDMIVSNPPY 129 56777899***********************************66679********** PP >> tr|A7RYK6|A7RYK6_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g241579 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.5 0.1 4.9e-06 0.007 44 130 .. 89 152 .. 58 162 .. 0.77 Alignments for each domain: == domain 1 score: 16.5 bits; conditional E-value: 4.9e-06 HHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS---EEEE-- CS UPF0020 44 IEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnp 129 IE al++ ++++++ D+++++v+ eNa+ gv+ ++++ qad+ + lk ++d+i p tr|A7RYK6|A7RYK6_NEMVE 89 IEFALQVP------------------------QAEVWATDINPAAVDDVAENARLHGVETSVTAIQADVFDCDdLKGMKFDMIFFRP 151 44444444........................4559*********************************999944444999998888 PP - CS UPF0020 130 P 130 P tr|A7RYK6|A7RYK6_NEMVE 152 P 152 8 PP >> tr|A7T8E8|A7T8E8_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g223766 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.5 0.1 4.8e-06 0.007 44 130 .. 89 152 .. 58 162 .. 0.77 Alignments for each domain: == domain 1 score: 16.5 bits; conditional E-value: 4.8e-06 HHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS---EEEE-- CS UPF0020 44 IEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnp 129 IE al++ ++++++ D+++++v+ eNa+ gv+ ++++ qad+ + lk ++d+i p tr|A7T8E8|A7T8E8_NEMVE 89 IEFALQVP------------------------QAEVWATDINPAAVDDVAENARLHGVETSVTAIQADVFDCDdLKGMKFDMIFFRP 151 44444444........................4559*********************************999944444999998888 PP - CS UPF0020 130 P 130 P tr|A7T8E8|A7T8E8_NEMVE 152 P 152 8 PP >> tr|A7RVI7|A7RVI7_NEMVE 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Nematostella vectensis OX= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.1 0.0 3.1e-06 0.0045 65 124 .. 118 180 .. 88 204 .. 0.76 Alignments for each domain: == domain 1 score: 17.1 bits; conditional E-value: 3.1e-06 HHHHHHHHHH..HH--.EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---E CS UPF0020 65 lkaeaeeear..aelk.lygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdv 124 k++a+++++ + + + D+++ +++ ++++ + ++++ i++++ da++L+ +++++d+ tr|A7RVI7|A7RVI7_NEMVE 118 TKKKAKQKKEteNLSShVTVCDINKYMLRIGKKKGQTLNLKKGISWVAGDAQSLPFADDSFDA 180 344444444432444469999**********************************88889985 PP >> tr|A7SJF3|A7SJF3_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g245654 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 0.0 3.2e-05 0.047 74 127 .. 87 139 .. 51 160 .. 0.90 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 3.2e-05 HHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE CS UPF0020 74 raelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivt 127 ++ ++++++l++ + + a + +++g++d++++++ d+ kL+ ++++d +v+ tr|A7SJF3|A7SJF3_NEMVE 87 NTGCHVVALELQEDMHESAIDLTKRCGLSDKVKLQCGDILKLE-HSESYDFLVS 139 45566999***********************************.7779**9997 PP >> tr|A7SVE2|A7SVE2_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g218063 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.3 0.00013 0.19 44 125 .. 89 147 .. 58 152 .. 0.75 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 0.00013 HHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS---EE CS UPF0020 44 IEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvi 125 IE al++ ++++++ D+++++v+ eNa gv++++++ qad+ + lk ++d+i tr|A7SVE2|A7SVE2_NEMVE 89 IEFALQVP------------------------QAEVWATDINPAAVEDVAENACLHGVENSVTAIQADVFDCDgLKGMKFDMI 147 44444444........................4559********************************998885444477776 PP >> tr|A7TBN7|A7TBN7_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g224919 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.0 6.4e-05 0.092 72 131 .. 128 185 .. 103 195 .. 0.87 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 6.4e-05 HHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE---- CS UPF0020 72 earaelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPY 131 ++r+ +l g+D +++v+ a++N + ++++ +++ + L + + +iv+npPY tr|A7TBN7|A7TBN7_NEMVE 128 SERPAWRLTGVDRVSEAVALAERNRARLKLSNANFAESHWFSVLV-GH-RFQLIVSNPPY 185 45566779************************9999999999888.55.79********* PP >> tr|A7SVE3|A7SVE3_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g218064 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 0.2 0.00016 0.23 49 125 .. 94 147 .. 59 152 .. 0.79 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 0.00016 HHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS---EE CS UPF0020 49 lganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvi 125 ++ +++++++ D+++++v+ eNa gv++++++ qad+ + lk ++d+i tr|A7SVE3|A7SVE3_NEMVE 94 QV------------------------PQAEVWATDINPAAVEDVAENACLHGVENSVTAIQADVFDCDgLKGMKFDMI 147 33........................45569********************************998885444477776 PP >> tr|A7SY09|A7SY09_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g248028 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.2 0.00016 0.24 50 125 .. 95 147 .. 59 152 .. 0.80 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 0.00016 HTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS---EE CS UPF0020 50 ganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvi 125 + +++++++ D+++++v+ eNa gv++++++ qad+ + lk ++d+i tr|A7SY09|A7SY09_NEMVE 95 V------------------------PQAEVWATDINPAAVEDVAENACLHGVENSVTAIQADVFDCDgLKGMKFDMI 147 3........................45669********************************998885444477776 PP >> tr|A7RW11|A7RW11_NEMVE rRNA adenine N(6)-methyltransferase OS=Nematostella vectensis OX=45351 GN=v1g241083 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.0 0.00018 0.26 75 133 .. 72 128 .. 48 137 .. 0.90 2 ? -2.5 0.0 3.3 4.7e+03 165 194 .. 226 255 .. 220 257 .. 0.80 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 0.00018 HH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE------ CS UPF0020 75 aelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGe 133 + k+++ +ld+r+v+ ++ + + ++ + ++ + d+ k l+ +dv v+n+PY + tr|A7RW11|A7RW11_NEMVE 72 QSKKVIACELDPRMVAELQKRVQGTPLQSKLSVMVGDVLKTDLPF--FDVCVANLPYQI 128 556699********************************9888666..9*********76 PP == domain 2 score: -2.5 bits; conditional E-value: 3.3 EEESSHHHHHCC---ESEEEEEEETTEEEE CS UPF0020 165 ltsenkalekaleeralrkvkeknvklgll 194 + +nk+l +++++r + +v ekn k+ + tr|A7RW11|A7RW11_NEMVE 226 FVRKNKTLSACFNSRPVLEVLEKNYKIHCS 255 567889999999999999999999988886 PP >> tr|A7SY10|A7SY10_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g219300 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 0.3 0.00029 0.41 49 125 .. 94 147 .. 59 152 .. 0.78 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.00029 HHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS---EE CS UPF0020 49 lganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvi 125 ++ +++++++ D+++++v+ eNa gv++++++ qad+ + lk ++d+i tr|A7SY10|A7SY10_NEMVE 94 QV------------------------PQAEVWATDINPAAVEDVAENACLHGVANSVTAIQADVFDCDgLKGMKFDMI 147 33........................45569********************************998885444477776 PP >> tr|A7RHA8|A7RHA8_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g197133 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 0.0 0.00013 0.18 74 130 .. 94 151 .. 64 153 .. 0.84 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 0.00013 HHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS---EEEE--- CS UPF0020 74 raelklygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnpP 130 ++ ++++ D ++++v+ + eNa+ gv++++ + d+ k + l+ + +d+i P tr|A7RHA8|A7RHA8_NEMVE 94 SKKCQVWATDVNPSAVKNTAENAKLHGVDNQVRTATGDVFKAPgLAGKTFDIIFWSHP 151 36778**********************************9999766668888866655 PP >> tr|A7SJ10|A7SJ10_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g120055 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.0 0.00016 0.23 72 105 .. 62 94 .. 27 111 .. 0.72 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 0.00016 HHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGE CS UPF0020 72 earaelklygsDldrrvvqgareNaekagvgdli 105 ++ + ++gsD+d+++++ a++N +++ v++ i tr|A7SJ10|A7SJ10_NEMVE 62 KNYEPRVIVGSDIDNSLIRIAKSNIRNY-VEKPI 94 33344459******************98.44444 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (197 nodes) Target sequences: 24428 (8257945 residues searched) Passed MSV filter: 632 (0.025872); expected 488.6 (0.02) Passed bias filter: 516 (0.0211233); expected 488.6 (0.02) Passed Vit filter: 59 (0.00241526); expected 24.4 (0.001) Passed Fwd filter: 17 (0.000695923); expected 0.2 (1e-05) Initial search space (Z): 24428 [actual number of targets] Domain search space (domZ): 17 [number of targets reported over threshold] # CPU time: 0.17u 0.01s 00:00:00.18 Elapsed: 00:00:00.07 # Mc/sec: 23240.22 // [ok]