# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/UPF0020.hmm.txt
# target sequence database: proteomes/Trichomonas_vaginalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: UPF0020 [M=197]
Accession: PF01170.17
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7e-08 33.9 0.0 2.2e-05 25.7 0.0 2.4 1 tr|A2EVN9|A2EVN9_TRIVA MGC78809 protein, putative OS=Trichom
2.7e-06 28.7 0.0 3.6e-06 28.3 0.0 1.3 1 tr|A2DMU5|A2DMU5_TRIVA Methyltransferase, putative OS=Tricho
0.001 20.3 0.0 0.0015 19.7 0.0 1.4 1 tr|A2DM16|A2DM16_TRIVA MGC80481 protein, putative OS=Trichom
------ inclusion threshold ------
0.13 13.4 1.8 2.8 9.0 1.3 2.8 2 tr|A2ELU0|A2ELU0_TRIVA Uncharacterized protein OS=Trichomona
0.49 11.5 0.0 0.89 10.7 0.0 1.4 1 tr|A2E549|A2E549_TRIVA Protein arginine N-methyltransferase-
Domain annotation for each sequence (and alignments):
>> tr|A2EVN9|A2EVN9_TRIVA MGC78809 protein, putative OS=Trichomonas vaginalis OX=5722 GN=TVAG_299110 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.7 0.0 2.2e-09 2.2e-05 4 168 .. 184 340 .. 182 347 .. 0.64
Alignments for each domain:
== domain 1 score: 25.7 bits; conditional E-value: 2.2e-09
S-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHH CS
UPF0020 4 RefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvq 90
R+f ++++ +++A + pg+ +DP+ GsG++lI aa lga++ + +k+ + g +++ v
tr|A2EVN9|A2EVN9_TRIVA 184 RKFINKTSMESSVAIHACVQGLAGPGKIVYDPFVGSGSLLIAAASLGAYALGSD-----YDMKS---------MTQQGPEKKDGV-- 254
5556666666666644444444558999***********************322.....22222.........223344444333.. PP
HHHHHHHHTT-GGG...EEEEE--GGG--.STTS---EEEE----------HHHH.HHHHHHHHH...HHHHH-TT..-EEEEEES CS
UPF0020 91 gareNaekagvgdl...iefsqadaakLr.lkegevdvivtnpPYGerlgskkal.ekLYseflr...elkrvlrgggrlvlltse 168
+N +++g+ d+ i + +Lr k + d+ivt+pPYG+r ++ + L + +lr ++ +l+ ggrlv+ +++
tr|A2EVN9|A2EVN9_TRIVA 255 SIPDNFKQYGLLDRflgIFRLDFLSDNLRyDKMPKLDAIVTDPPYGIREKQRSDApSPLLPLLLRlyeVAAVCLKVGGRLVYWLPT 340
45789999998876322334455557888544459*************99887765666665544111566666777777776655 PP
>> tr|A2DMU5|A2DMU5_TRIVA Methyltransferase, putative OS=Trichomonas vaginalis OX=5722 GN=TVAG_254280 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.3 0.0 3.6e-10 3.6e-06 79 136 .. 74 132 .. 57 169 .. 0.87
Alignments for each domain:
== domain 1 score: 28.3 bits; conditional E-value: 3.6e-10
EEEEES-HHHHHHHHHHHHHTT-GG..GEEEEE--GGG--STTS---EEEE--------- CS
UPF0020 79 lygsDldrrvvqgareNaekagvgd..liefsqadaakLrlkegevdvivtnpPYGerlg 136
+ +Dld+ +++a++N+ + ++ i f + d++kL +e+++d++v npP+G r +
tr|A2DMU5|A2DMU5_TRIVA 74 VHSFDLDPVSIEAAKRNLDLLEFDEppPIFFHECDVTKLG-DEQKFDTVVMNPPFGTRNK 132
6789***************999987446************.999*************976 PP
>> tr|A2DM16|A2DM16_TRIVA MGC80481 protein, putative OS=Trichomonas vaginalis OX=5722 GN=TVAG_463050 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.7 0.0 1.5e-07 0.0015 78 133 .. 140 196 .. 102 236 .. 0.88
Alignments for each domain:
== domain 1 score: 19.7 bits; conditional E-value: 1.5e-07
-EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS---EEEE------ CS
UPF0020 78 klygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGe 133
++g+D + + +a++N + ++v++ +f++ d+ k+ ++++ + + + pP+G
tr|A2DM16|A2DM16_TRIVA 140 FVIGIDTSAIRIVCAKKNSKVCKVDQATDFVKGDVIKFLnTQHNSARFVFCSPPWGG 196
389********************************9987677779**********95 PP
>> tr|A2ELU0|A2ELU0_TRIVA Uncharacterized protein OS=Trichomonas vaginalis OX=5722 GN=TVAG_151750 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.5 0.0 0.46 4.6e+03 65 117 .. 70 122 .. 54 137 .. 0.69
2 ? 9.0 1.3 0.00028 2.8 48 130 .. 395 457 .. 361 466 .. 0.68
Alignments for each domain:
== domain 1 score: -1.5 bits; conditional E-value: 0.46
HHHHHHHHHHHH--.EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--S CS
UPF0020 65 lkaeaeeearaelk.lygsDldrrvvqgareNaekagvgdliefsqadaakLrl 117
+ + +++ ++ ++ +D+++ +q+ +++ +a+ g++ f++ +++L+l
tr|A2ELU0|A2ELU0_TRIVA 70 ANYTYASKKKSKYAgIIKFDNNEDRLQCY-RKLVAARFGEKCLFVVPLHKDLHL 122
33333334444444699999999999865.578999999999999999999983 PP
== domain 2 score: 9.0 bits; conditional E-value: 0.00028
HHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--......STTS---EEEE- CS
UPF0020 48 llganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLr......lkegevdvivtn 128
+ k++g+D+++ +++ a++Na k ++++ + + L+ ++eg+ v++ +
tr|A2ELU0|A2ELU0_TRIVA 395 K--------------------------KAKKVIGIDIEKDAIEDAKKNATKNKIKNAEFIAAPAQDVLPgildqcEAEGSRVVVIVD 455
3..........................333477999999999999999999888776554443333344555565566666666777 PP
-- CS
UPF0020 129 pP 130
pP
tr|A2ELU0|A2ELU0_TRIVA 456 PP 457
76 PP
>> tr|A2E549|A2E549_TRIVA Protein arginine N-methyltransferase-related protein OS=Trichomonas vaginalis OX=5722 GN=TVAG
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.7 0.0 8.9e-05 0.89 79 128 .. 68 115 .. 42 116 .. 0.91
Alignments for each domain:
== domain 1 score: 10.7 bits; conditional E-value: 8.9e-05
EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE- CS
UPF0020 79 lygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtn 128
+y++D+ + ++++a++ ++ +++++i+f q ++ +L+ +e vdvi+++
tr|A2E549|A2E549_TRIVA 68 VYAVDN-STIIETAKKIDKDNNLENKITFLQGKIEELQIPE-RVDVIISE 115
788886.689****************************777.8*****96 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (197 nodes)
Target sequences: 50190 (17055200 residues searched)
Passed MSV filter: 1268 (0.025264); expected 1003.8 (0.02)
Passed bias filter: 920 (0.0183303); expected 1003.8 (0.02)
Passed Vit filter: 39 (0.000777047); expected 50.2 (0.001)
Passed Fwd filter: 5 (9.96214e-05); expected 0.5 (1e-05)
Initial search space (Z): 50190 [actual number of targets]
Domain search space (domZ): 5 [number of targets reported over threshold]
# CPU time: 0.27u 0.01s 00:00:00.28 Elapsed: 00:00:00.12
# Mc/sec: 27998.95
//
[ok]