# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/UPF0020.hmm.txt
# target sequence database: proteomes/Trichoplax_adhaerens.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: UPF0020 [M=197]
Accession: PF01170.17
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.2e-35 119.8 0.0 2.9e-33 114.6 0.0 2.1 1 tr|B3RXB5|B3RXB5_TRIAD Uncharacterized protein OS=Trichoplax
2.3e-07 30.1 0.1 1e-05 24.7 0.1 2.8 1 tr|B3S1Y4|B3S1Y4_TRIAD Uncharacterized protein (Fragment) OS
2.6e-07 29.9 0.0 8.8e-07 28.2 0.0 1.9 1 tr|B3S2Q2|B3S2Q2_TRIAD Uncharacterized protein OS=Trichoplax
6.7e-05 22.0 0.2 0.00034 19.7 0.2 1.9 1 tr|B3RUJ8|B3RUJ8_TRIAD Uncharacterized protein OS=Trichoplax
0.00011 21.3 0.0 0.00014 21.0 0.0 1.4 1 tr|B3RQF2|B3RQF2_TRIAD Uncharacterized protein OS=Trichoplax
0.0006 18.9 0.0 0.0013 17.8 0.0 1.6 1 tr|B3RJV9|B3RJV9_TRIAD 2-methoxy-6-polyprenyl-1,4-benzoquino
0.0013 17.8 0.0 0.0019 17.3 0.0 1.2 1 tr|B3S3V1|B3S3V1_TRIAD Uncharacterized protein OS=Trichoplax
------ inclusion threshold ------
0.027 13.5 0.1 0.076 12.1 0.1 1.7 1 tr|B3RP82|B3RP82_TRIAD Uncharacterized protein OS=Trichoplax
0.11 11.6 0.1 0.18 10.8 0.1 1.3 1 tr|B3S9Y1|B3S9Y1_TRIAD Ubiquinone biosynthesis O-methyltrans
Domain annotation for each sequence (and alignments):
>> tr|B3RXB5|B3RXB5_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_25997 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 114.6 0.0 2.2e-36 2.9e-33 4 195 .. 106 280 .. 102 282 .. 0.89
Alignments for each domain:
== domain 1 score: 114.6 bits; conditional E-value: 2.2e-36
S-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHH CS
UPF0020 4 RefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvq 90
++ +gp++L++t+A+ ++rla++++g+ DPm G+G+i +E+a+ + + + ++ D+ +++
tr|B3RXB5|B3RXB5_TRIAD 106 TQ-FGPTALRSTIAYNMLRLADIQNGDIVCDPMAGGGSISVEGAVNWISSFH------------------------ICGDNHHAAGL 167
44.56**********************************************5........................78888888888 PP
HHHHHHHHTT-GGGE.....EEEE--GGG--STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT...-EEEEEESSHH CS
UPF0020 91 gareNaekagvgdli.....efsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgg.grlvlltsenka 171
++ N +ag ++ i ++ ++d++ L+l++++vd++v+++P+G+r+gsk++++kLY++ l+e++r++r + gr+vllt+++k
tr|B3RXB5|B3RXB5_TRIAD 168 RSVANRDYAGNQNNIrsmamDVATWDVCCLPLRRNSVDIVVSDMPFGKRIGSKHKNWKLYDHALSEMARICRCSsGRAVLLTQDSKV 254
88888888888877622222578899999999999************************************9776************ PP
HHHCC---..ESEEEEEEETTEEEEE CS
UPF0020 172 lekaleer..alrkvkeknvklglll 195
++k+l++ +++++ +++++g+l
tr|B3RXB5|B3RXB5_TRIAD 255 MTKVLQQYkhLWKRRHCYWINIGGLT 280
******98778***********9975 PP
>> tr|B3S1Y4|B3S1Y4_TRIAD Uncharacterized protein (Fragment) OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_27498 PE=4
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.7 0.1 8e-09 1e-05 4 143 .. 145 276 .. 143 318 .. 0.73
Alignments for each domain:
== domain 1 score: 24.7 bits; conditional E-value: 8e-09
S-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHH.HH--EEEEES-HHHH CS
UPF0020 4 RefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeear.aelklygsDldrrvv 89
R++ g+++++++L +++ ++ + + ++DP+ G+G+i + a ga + +++ ++ ++ r + k++g D + +
tr|B3S1Y4|B3S1Y4_TRIAD 145 RKYIGNTSMSAELC--FLMANQALARSLIYDPFVGTGSITLACAHFGAFTLGADIDPNI---LHGRGRSSRaKGPKFRGPDEN-VYA 225
78888999999985..555556677799*************999988888843343333...3333334442445599*9976.677 PP
HHHHHHHHHTT-GGGEEEEE--GGG--.STTS---EEEE----------HHHHHH CS
UPF0020 90 qgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGerlgskkalek 143
+ ++ ++++ +++ ++daak ++ +d+ivt+pPYG+r g+ k l k
tr|B3S1Y4|B3S1Y4_TRIAD 226 NYCQYKLQSNF----VDVMVLDAAKPAwKDGLHFDAIVTDPPYGIREGARKVLSK 276
88888888755....555666666666335559*************998887655 PP
>> tr|B3S2Q2|B3S2Q2_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_58107 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.2 0.0 6.9e-10 8.8e-07 78 133 .. 585 639 .. 556 649 .. 0.90
Alignments for each domain:
== domain 1 score: 28.2 bits; conditional E-value: 6.9e-10
-EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE------ CS
UPF0020 78 klygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGe 133
+++++D+d++ +++ar Na+ ++v+++ief + d+ +L ++ + dv+ pP+G
tr|B3S2Q2|B3S2Q2_TRIAD 585 HVIAIDIDPNKIKCARHNAKIYNVEHKIEFIVGDFLQLA-PSLKADVVFLSPPWGG 639
489************************************.9999**********95 PP
>> tr|B3RUJ8|B3RUJ8_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_24037 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.7 0.2 2.6e-07 0.00034 74 131 .. 155 217 .. 130 230 .. 0.88
Alignments for each domain:
== domain 1 score: 19.7 bits; conditional E-value: 2.6e-07
HHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.....STTS---EEEE---- CS
UPF0020 74 raelklygsDldrrvvqgareNaekagvgdliefsqadaakLr.....lkegevdvivtnpPY 131
++++ +++D+d++++ ++ N ++ ++g ++ ++ +d+ k + ++ vd iv+npPY
tr|B3RUJ8|B3RUJ8_TRIAD 155 NPQATCIAIDKDPNAISLTELNSQRLNLGSRMIVEHLDVMKTEfhhgfGHDEAVDFIVSNPPY 217
4667799******************************9988776688756669********** PP
>> tr|B3RQF2|B3RQF2_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_54966 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.0 0.0 1.1e-07 0.00014 78 134 .. 73 130 .. 35 175 .. 0.88
Alignments for each domain:
== domain 1 score: 21.0 bits; conditional E-value: 1.1e-07
-.EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS---EEEE------- CS
UPF0020 78 k.lygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGer 134
+ ++g+D+d ++ ar+N e+ ++++ +++ +a++ + + + +d+++ npP+G +
tr|B3RQF2|B3RQF2_TRIAD 73 SlIVGIDIDDDALMIARRNIEEFELEN-VQLIKANISDTEfFGGKIFDTVIMNPPFGTK 130
3499********************985.677777888888645558***********75 PP
>> tr|B3RJV9|B3RJV9_TRIAD 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Trichoplax adhaerens OX=10
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.8 0.0 1e-06 0.0013 65 125 .. 119 182 .. 79 186 .. 0.80
Alignments for each domain:
== domain 1 score: 17.8 bits; conditional E-value: 1e-06
HHHHHHHHHHHH--...EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EE CS
UPF0020 65 lkaeaeeearaelk...lygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvi 125
+k+ + ++++++++ + +D+++++++ +++ ++ g ++ i++ + da +L+ k+++ d++
tr|B3RJV9|B3RJV9_TRIAD 119 VKNSMDKNTQENIPncaISVIDINQSMLDVGKTRGKELGYQGDIKWIKGDAENLPVKDSSADLV 182
666666666655544559999**********************************888788876 PP
>> tr|B3S3V1|B3S3V1_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_28751 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.3 0.0 1.5e-06 0.0019 78 142 .. 119 190 .. 110 240 .. 0.76
Alignments for each domain:
== domain 1 score: 17.3 bits; conditional E-value: 1.5e-06
-EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--......STTS---EEEE-----.-----HHHHH CS
UPF0020 78 klygsDldrrvvqgareNaekagvgdliefsqadaakLr......lkegevdvivtnpPYG.erlgskkale 142
++ + + d+r v+ a++N ++++i+++ a+++ ++++++d +npP+ ++l++k+a++
tr|B3S3V1|B3S3V1_TRIAD 119 NFLATEVDQRCVHYAQKNVTINDLDEKIKIKMVAAQDILctplrnENRQQYDFCMCNPPFFiDSLDAKGANR 190
58899**********************99998888876555655767779*********8525777777775 PP
>> tr|B3RP82|B3RP82_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_53437 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.1 0.1 5.9e-05 0.076 77 172 .. 84 173 .. 66 187 .. 0.68
Alignments for each domain:
== domain 1 score: 12.1 bits; conditional E-value: 5.9e-05
--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE----------H.HHHHHHHHHHHHHHHHH-TT..-E CS
UPF0020 77 lklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgsk.kalekLYseflrelkrvlrgggrl 162
k yg+D+++++++++r+++ + +v+ + + q + +++ +++++d ++n l+ ++l+ f re++rvl+++g+
tr|B3RP82|B3RP82_TRIAD 84 DKAYGIDMNQAMLAQCRTKLDQHQVQAELIQAQ--VPAIPFDDHQFDF-ICNCQMLHHLSGGlPTLK----DFFREINRVLKNNGMV 163
359********************9987665555..5555544557876.577655555433213333....4444455555556677 PP
EEEEESSHHH CS
UPF0020 163 vlltsenkal 172
++ +++++++
tr|B3RP82|B3RP82_TRIAD 164 IVNFTTKEQI 173
7777666655 PP
>> tr|B3S9Y1|B3S9Y1_TRIAD Ubiquinone biosynthesis O-methyltransferase, mitochondrial OS=Trichoplax adhaerens OX=10228 G
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.8 0.1 0.00014 0.18 76 127 .. 127 181 .. 118 183 .. 0.87
Alignments for each domain:
== domain 1 score: 10.8 bits; conditional E-value: 0.00014
H--EEEEES-HHHHHHHHHHHHHT.T-GGGEEEEE--GGG--..STTS---EEEE CS
UPF0020 76 elklygsDldrrvvqgareNaeka.gvgdliefsqadaakLr..lkegevdvivt 127
+++ g+D +++++ a+ a+k+ +v+ +++++ + +L+ ++ +++d++++
tr|B3S9Y1|B3S9Y1_TRIAD 127 GAQVTGIDASSEIINVAKAHASKCdRVAANVSYQCTTIEQLTttENAQSFDAVIA 181
5789*******************95699**************7656669**9996 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (197 nodes)
Target sequences: 11518 (5222075 residues searched)
Passed MSV filter: 340 (0.029519); expected 230.4 (0.02)
Passed bias filter: 279 (0.024223); expected 230.4 (0.02)
Passed Vit filter: 40 (0.00347283); expected 11.5 (0.001)
Passed Fwd filter: 9 (0.000781386); expected 0.1 (1e-05)
Initial search space (Z): 11518 [actual number of targets]
Domain search space (domZ): 9 [number of targets reported over threshold]
# CPU time: 0.11u 0.01s 00:00:00.12 Elapsed: 00:00:00.05
# Mc/sec: 20574.98
//
[ok]