# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/WBS_methylT.hmm.txt # target sequence database: proteomes/Anolis_carolinensis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: WBS_methylT [M=82] Accession: PF12589.7 Description: Methyltransferase involved in Williams-Beuren syndrome Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-19 68.6 6.3 1e-18 67.9 6.3 1.4 1 tr|H9GHL0|H9GHL0_ANOCA BUD23, rRNA methyltransferase and rib Domain annotation for each sequence (and alignments): >> tr|H9GHL0|H9GHL0_ANOCA BUD23, rRNA methyltransferase and ribosome maturation factor OS=Anolis carolinensis OX=28377 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.9 6.3 5.5e-23 1e-18 1 81 [. 203 277 .. 203 278 .. 0.84 Alignments for each domain: == domain 1 score: 67.9 bits; conditional E-value: 5.5e-23 WBS_methylT 1 LfaGkseqqqlpkglgedgeeeseeaeqvkyekrrrkrkkrkkkkkkavksreWilkKKerrrkkGkeVkrdSKYTGRkRk 81 Lf+G ++ lpkglg++ + e+ +q k++++r + ++ k+k+ +k+r+W+l+KKerrr++GkeV++d+KYT+RkR+ tr|H9GHL0|H9GHL0_ANOCA 203 LFVG--TSDVLPKGLGAECSVEE--TTQAKFTQERTRFRN--AKGKSVKKGRDWVLEKKERRRRQGKEVRADTKYTARKRR 277 8999..999******99996554..588888887777664..55555578******************************8 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (82 nodes) Target sequences: 18528 (9796552 residues searched) Passed MSV filter: 1948 (0.105138); expected 370.6 (0.02) Passed bias filter: 587 (0.0316818); expected 370.6 (0.02) Passed Vit filter: 78 (0.00420984); expected 18.5 (0.001) Passed Fwd filter: 2 (0.000107945); expected 0.2 (1e-05) Initial search space (Z): 18528 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.17u 0.01s 00:00:00.18 Elapsed: 00:00:00.09 # Mc/sec: 8925.75 // [ok]