# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/WBS_methylT.hmm.txt # target sequence database: proteomes/Ciona_intestinalis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: WBS_methylT [M=82] Accession: PF12589.7 Description: Methyltransferase involved in Williams-Beuren syndrome Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-20 72.9 10.0 4.5e-20 72.1 10.0 1.4 1 tr|F6TFE2|F6TFE2_CIOIN Uncharacterized protein OS=Ciona inte Domain annotation for each sequence (and alignments): >> tr|F6TFE2|F6TFE2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.1 10.0 2.7e-24 4.5e-20 1 82 [] 204 281 .. 204 281 .. 0.90 Alignments for each domain: == domain 1 score: 72.1 bits; conditional E-value: 2.7e-24 WBS_methylT 1 LfaGkseqqqlpkglgedgeeeseeaeqvkyekrrrkrkkrkkkkkkavksreWilkKKerrrkkGkeVkrdSKYTGRkRka 82 Lf+G ++ +lpk+lg+++e++++ +q+ky k+r++r + k++k+ +ksr+Wi++KKerr+++GkeV ++KYTGRkRk+ tr|F6TFE2|F6TFE2_CIOIN 204 LFCG-VASPTLPKALGTEEEAKKK--RQIKYVKEREQRGSDKRNKS-IKKSRDWIIEKKERRKRQGKEVSINTKYTGRKRKP 281 89**.8999**********88766..******99998886665555.789******************************95 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (82 nodes) Target sequences: 16678 (5370518 residues searched) Passed MSV filter: 1548 (0.0928169); expected 333.6 (0.02) Passed bias filter: 423 (0.0253628); expected 333.6 (0.02) Passed Vit filter: 42 (0.00251829); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119918); expected 0.2 (1e-05) Initial search space (Z): 16678 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.09u 0.00s 00:00:00.09 Elapsed: 00:00:00.04 # Mc/sec: 11009.56 // [ok]