# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/WBS_methylT.hmm.txt # target sequence database: proteomes/Ciona_savignyi.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: WBS_methylT [M=82] Accession: PF12589.7 Description: Methyltransferase involved in Williams-Beuren syndrome Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-21 74.4 6.1 1e-20 73.6 6.1 1.4 1 tr|H2Z4R2|H2Z4R2_CIOSA Uncharacterized protein OS=Ciona savi Domain annotation for each sequence (and alignments): >> tr|H2Z4R2|H2Z4R2_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.6 6.1 8.8e-25 1e-20 1 82 [] 202 278 .. 202 278 .. 0.91 Alignments for each domain: == domain 1 score: 73.6 bits; conditional E-value: 8.8e-25 WBS_methylT 1 LfaGkseqqqlpkglgedgeeeseeaeqvkyekrrrkrkkrkkkkkkavksreWilkKKerrrkkGkeVkrdSKYTGRkRka 82 Lf+G ++ +lpkglg+++e++++ +q+ky k+r +r+ k ++k+ ksr+Wi++KKerr+++Gk+V ++KYTGRkRk+ tr|H2Z4R2|H2Z4R2_CIOSA 202 LFCG-VQSPTLPKGLGTEEEMTKN--RQIKYVKERDQRTFGK--RNKSIKSRDWIIEKKERRKRQGKSVCMTTKYTGRKRKP 278 89**.8999**********98876..********99999654..455589******************************95 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (82 nodes) Target sequences: 11592 (4231397 residues searched) Passed MSV filter: 1030 (0.0888544); expected 231.8 (0.02) Passed bias filter: 318 (0.0274327); expected 231.8 (0.02) Passed Vit filter: 16 (0.00138026); expected 11.6 (0.001) Passed Fwd filter: 1 (8.62664e-05); expected 0.1 (1e-05) Initial search space (Z): 11592 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.06u 0.00s 00:00:00.06 Elapsed: 00:00:00.02 # Mc/sec: 17348.73 // [ok]