# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/WBS_methylT.hmm.txt # target sequence database: proteomes/Dictyostelium_discoideum.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: WBS_methylT [M=82] Accession: PF12589.7 Description: Methyltransferase involved in Williams-Beuren syndrome Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5e-21 74.8 11.0 7.9e-21 74.1 11.0 1.3 1 sp|Q55DA6|BUD23_DICDI Probable 18S rRNA (guanine-N(7))-meth Domain annotation for each sequence (and alignments): >> sp|Q55DA6|BUD23_DICDI Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Dictyostelium discoideum OX=44689 GN=DDB # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 74.1 11.0 6.2e-25 7.9e-21 1 81 [. 201 284 .. 201 285 .. 0.93 Alignments for each domain: == domain 1 score: 74.1 bits; conditional E-value: 6.2e-25 WBS_methylT 1 LfaGkseqqqlpkglgedgeeese....eaeqvkyekrrrkrkkr.kkkkkkavksreWilkKKerrrkkGkeVkrdSKYTGRkRk 81 Lf+G +++ +p ++g +gee ++ ++++vky++r+r+r++ k+k++ ++k++eWi++KK+r+rk+G+e+k+dSK++GRkR sp|Q55DA6|BUD23_DICDI 201 LFTG--NNNIMPSAKGVEGEEYEQqeeeDSNEVKYSNRKRDRRRVtKSKGSAQHKTKEWIMNKKDRQRKQGREIKNDSKFSGRKRG 284 8999..9999*****999998877888999***********99998999999999******************************5 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (82 nodes) Target sequences: 12739 (6856946 residues searched) Passed MSV filter: 3582 (0.281184); expected 254.8 (0.02) Passed bias filter: 1563 (0.122694); expected 254.8 (0.02) Passed Vit filter: 350 (0.0274747); expected 12.7 (0.001) Passed Fwd filter: 119 (0.00934139); expected 0.1 (1e-05) Initial search space (Z): 12739 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.16u 0.02s 00:00:01.18 Elapsed: 00:00:00.46 # Mc/sec: 1222.33 // [ok]