# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/WBS_methylT.hmm.txt # target sequence database: proteomes/Drosophila_melanogaster.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: WBS_methylT [M=82] Accession: PF12589.7 Description: Methyltransferase involved in Williams-Beuren syndrome Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-17 61.1 4.1 1.6e-16 60.5 4.1 1.3 1 tr|Q9VHW6|Q9VHW6_DROME RE22146p OS=Drosophila melanogaster O Domain annotation for each sequence (and alignments): >> tr|Q9VHW6|Q9VHW6_DROME RE22146p OS=Drosophila melanogaster OX=7227 GN=Dmel\CG10903 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.5 4.1 1.2e-20 1.6e-16 1 81 [. 202 273 .. 202 274 .. 0.88 Alignments for each domain: == domain 1 score: 60.5 bits; conditional E-value: 1.2e-20 WBS_methylT 1 LfaGkseqqqlpkglgedgeeeseeaeqvkyekrrrkrkkrkkkkkkavksreWilkKKerrrkkGkeVkrdSKYTGRkRk 81 L++G +++lp++lg +e +++v+y k+r ++ ++k+ +ksr+Wil+KKerrr++G e ++d+KYT+RkR tr|Q9VHW6|Q9VHW6_DROME 202 LMTG--GSAELPQALGSPEE-----ERRVNYIKKRDACREARGKAP--KKSRDWILAKKERRRRQGLETRPDTKYTARKRS 273 7888..899******99994.....4899*9999998886666655..689*****************************6 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (82 nodes) Target sequences: 13786 (7394964 residues searched) Passed MSV filter: 1778 (0.128971); expected 275.7 (0.02) Passed bias filter: 540 (0.0391702); expected 275.7 (0.02) Passed Vit filter: 63 (0.00456985); expected 13.8 (0.001) Passed Fwd filter: 15 (0.00108806); expected 0.1 (1e-05) Initial search space (Z): 13786 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.21u 0.01s 00:00:00.22 Elapsed: 00:00:00.08 # Mc/sec: 7579.84 // [ok]