# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/WBS_methylT.hmm.txt # target sequence database: proteomes/Macaca_mulatta.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: WBS_methylT [M=82] Accession: PF12589.7 Description: Methyltransferase involved in Williams-Beuren syndrome Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.9e-14 52.8 4.7 2e-13 51.2 4.7 1.8 1 tr|A0A1D5Q4C9|A0A1D5Q4C9_MACMU Uncharacterized protein OS=Macac Domain annotation for each sequence (and alignments): >> tr|A0A1D5Q4C9|A0A1D5Q4C9_MACMU Uncharacterized protein OS=Macaca mulatta OX=9544 GN=BUD23 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.2 4.7 9.2e-18 2e-13 1 82 [] 203 293 .. 203 293 .. 0.61 Alignments for each domain: == domain 1 score: 51.2 bits; conditional E-value: 9.2e-18 WBS_methylT 1 LfaGkseqqqlpkglgedgeeeseeaeqvkyekrrr...............krkkrkkkkkkavksreWilkKKerrrk 64 Lf+G ++ +p+gl+e+++e++ +e+v ++r+ r +r++ ksr W+l+KKer r+ tr|A0A1D5Q4C9|A0A1D5Q4C9_MACMU 203 LFSG--PSTFIPEGLSENQDEDEP-RESVFTNEREGgpsissllclhhrvpFRMSRRGM---VRKSRAWVLEKKERHRR 275 6777..788889999888765544.4444444333332222222221100022222222...235************** PP WBS_methylT 65 kGkeVkrdSKYTGRkRka 82 +G+eV++d++YTGRkRk+ tr|A0A1D5Q4C9|A0A1D5Q4C9_MACMU 276 QGREVRPDTQYTGRKRKP 293 ****************95 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (82 nodes) Target sequences: 21211 (10888574 residues searched) Passed MSV filter: 2130 (0.10042); expected 424.2 (0.02) Passed bias filter: 641 (0.0302202); expected 424.2 (0.02) Passed Vit filter: 71 (0.00334732); expected 21.2 (0.001) Passed Fwd filter: 4 (0.000188581); expected 0.2 (1e-05) Initial search space (Z): 21211 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.19u 0.01s 00:00:00.20 Elapsed: 00:00:00.07 # Mc/sec: 12755.19 // [ok]