# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/WBS_methylT.hmm.txt # target sequence database: proteomes/Monodelphis_domestica.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: WBS_methylT [M=82] Accession: PF12589.7 Description: Methyltransferase involved in Williams-Beuren syndrome Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-19 68.1 5.7 1.7e-18 67.4 5.7 1.4 1 tr|F6TDD2|F6TDD2_MONDO BUD23, rRNA methyltransferase and rib ------ inclusion threshold ------ 0.32 12.0 3.4 1 10.4 3.4 1.9 1 tr|F6UKP4|F6UKP4_MONDO Uncharacterized protein OS=Monodelphi Domain annotation for each sequence (and alignments): >> tr|F6TDD2|F6TDD2_MONDO BUD23, rRNA methyltransferase and ribosome maturation factor OS=Monodelphis domestica OX=1361 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.4 5.7 1.6e-22 1.7e-18 1 81 [. 204 279 .. 204 280 .. 0.83 Alignments for each domain: == domain 1 score: 67.4 bits; conditional E-value: 1.6e-22 WBS_methylT 1 LfaGkseqqqlpkglgedgeeeseeaeqvkyekrrrkrkkrkkkkkkavksreWilkKKerrrkkGkeVkrdSKYTGRkRk 81 Lf+G + lpkglg++ +++e +++ k++++r + k+ k+k+ +ksr+Wil+KKerrr++GkeV++d++YTGRkR+ tr|F6TDD2|F6TDD2_MONDO 204 LFSG--PSGVLPKGLGTECGDSQE-MRESKFSNERIRFKTTKGKS--VKKSRDWILEKKERRRRQGKEVRADTRYTGRKRR 279 6888..7889*******9976655.77777877777777555554..468******************************8 PP >> tr|F6UKP4|F6UKP4_MONDO Uncharacterized protein OS=Monodelphis domestica OX=13616 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 3.4 9.7e-05 1 18 81 .. 165 241 .. 153 242 .. 0.77 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 9.7e-05 WBS_methylT 18 dgeeese.......eaeqvkyekrrrkrkkrkkkkkkavk......sreWilkKKerrrkkGkeVkrdSKYTGRkRk 81 ++++++e +++ v++++r+++++ + ++k++++ +++ K + r Gk+ ++ S Y R+Rk tr|F6UKP4|F6UKP4_MONDO 165 KDQKCNEfgrnlnlNSNPVRISSREKPQQYDNMDQKSKQNsdliihQKNHTEGKTYKPRIYGKHLRQSSTYVKRQRK 241 334455577778888999********99988444443333467888999999999999999***************9 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (82 nodes) Target sequences: 21272 (11266248 residues searched) Passed MSV filter: 2251 (0.10582); expected 425.4 (0.02) Passed bias filter: 674 (0.0316848); expected 425.4 (0.02) Passed Vit filter: 145 (0.00681647); expected 21.3 (0.001) Passed Fwd filter: 4 (0.000188041); expected 0.2 (1e-05) Initial search space (Z): 21272 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.18u 0.01s 00:00:00.19 Elapsed: 00:00:00.08 # Mc/sec: 11547.90 // [ok]